Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF80 and GFF81 are separated by 137 nucleotides GFF81 and GFF82 are separated by 8 nucleotides GFF82 and GFF83 overlap by 4 nucleotides
GFF80 - no description, at 96,512 to 98,155
GFF80
GFF81 - Bll6900 protein, at 98,293 to 98,895
GFF81
GFF82 - Alkylhydroperoxidase AhpD domain protein, at 98,904 to 99,557
GFF82
GFF83 - Alkanal monooxygenase alpha chain (EC 1.14.14.3), at 99,554 to 100,615
GFF83
Position (kb) 98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 97.593 kb on + strand, within GFF80 at 97.593 kb on + strand, within GFF80 at 97.594 kb on - strand, within GFF80 at 97.670 kb on + strand, within GFF80 at 97.670 kb on + strand, within GFF80 at 97.670 kb on + strand, within GFF80 at 97.670 kb on + strand, within GFF80 at 97.671 kb on - strand, within GFF80 at 97.671 kb on - strand, within GFF80 at 97.671 kb on - strand, within GFF80 at 97.671 kb on - strand, within GFF80 at 97.677 kb on + strand, within GFF80 at 97.678 kb on - strand, within GFF80 at 97.899 kb on + strand, within GFF80 at 98.109 kb on + strand at 98.110 kb on - strand at 98.110 kb on - strand at 98.146 kb on + strand at 98.146 kb on + strand at 98.147 kb on - strand at 98.147 kb on - strand at 98.189 kb on + strand at 98.190 kb on - strand at 98.582 kb on + strand, within GFF81 at 98.582 kb on + strand, within GFF81 at 98.582 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.729 kb on + strand, within GFF81 at 98.730 kb on - strand, within GFF81 at 98.867 kb on + strand at 98.867 kb on + strand at 98.868 kb on - strand at 99.151 kb on + strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.197 kb on - strand, within GFF82 at 99.295 kb on + strand, within GFF82 at 99.295 kb on + strand, within GFF82 at 99.295 kb on + strand, within GFF82 at 99.296 kb on - strand, within GFF82 at 99.296 kb on - strand, within GFF82 at 99.296 kb on - strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.413 kb on - strand, within GFF82
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 97,593 + GFF80 0.66 -2.0 97,593 + GFF80 0.66 -1.0 97,594 - GFF80 0.66 +0.6 97,670 + GFF80 0.70 -0.5 97,670 + GFF80 0.70 +0.9 97,670 + GFF80 0.70 -0.3 97,670 + GFF80 0.70 -0.9 97,671 - GFF80 0.70 +0.1 97,671 - GFF80 0.70 +1.3 97,671 - GFF80 0.70 +1.2 97,671 - GFF80 0.70 +0.9 97,677 + GFF80 0.71 +0.7 97,678 - GFF80 0.71 +2.1 97,899 + GFF80 0.84 -0.2 98,109 + -1.1 98,110 - +1.7 98,110 - +0.7 98,146 + +0.5 98,146 + +0.9 98,147 - -1.5 98,147 - +0.3 98,189 + +0.5 98,190 - -0.2 98,582 + GFF81 0.48 -0.7 98,582 + GFF81 0.48 -0.2 98,582 + GFF81 0.48 -1.2 98,660 + GFF81 0.61 -3.6 98,660 + GFF81 0.61 -0.7 98,660 + GFF81 0.61 -0.9 98,661 - GFF81 0.61 +1.3 98,661 - GFF81 0.61 +0.0 98,661 - GFF81 0.61 +1.7 98,729 + GFF81 0.72 -1.1 98,730 - GFF81 0.72 -1.6 98,867 + -2.1 98,867 + -0.3 98,868 - +1.7 99,151 + GFF82 0.38 -1.9 99,152 - GFF82 0.38 -0.0 99,152 - GFF82 0.38 +0.2 99,152 - GFF82 0.38 +0.2 99,196 + GFF82 0.45 +2.1 99,196 + GFF82 0.45 +0.7 99,196 + GFF82 0.45 +1.3 99,196 + GFF82 0.45 +0.5 99,197 - GFF82 0.45 -2.5 99,295 + GFF82 0.60 -2.0 99,295 + GFF82 0.60 -0.9 99,295 + GFF82 0.60 +0.4 99,296 - GFF82 0.60 -1.1 99,296 - GFF82 0.60 +0.1 99,296 - GFF82 0.60 +0.2 99,412 + GFF82 0.78 +0.1 99,412 + GFF82 0.78 -2.5 99,412 + GFF82 0.78 +1.0 99,412 + GFF82 0.78 -0.9 99,413 - GFF82 0.78 +0.8 99,413 - GFF82 0.78 +0.7 99,413 - GFF82 0.78 +0.2 99,413 - GFF82 0.78 +0.2
Or see this region's nucleotide sequence