Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7236 and GFF7237 are separated by 80 nucleotides GFF7237 and GFF7238 are separated by 4 nucleotides GFF7238 and GFF7239 are separated by 126 nucleotides
GFF7236 - Universal stress protein UspA and related nucleotide-binding proteins, at 17,159 to 18,106
GFF7236
GFF7237 - hypothetical protein, at 18,187 to 19,731
GFF7237
GFF7238 - no description, at 19,736 to 20,242
GFF7238
GFF7239 - Repair of Iron Centers di-iron protein, at 20,369 to 20,953
GFF7239
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 17.583 kb on - strand, within GFF7236 at 18.014 kb on + strand at 18.066 kb on + strand at 18.067 kb on - strand at 18.180 kb on - strand at 18.415 kb on + strand, within GFF7237 at 18.415 kb on + strand, within GFF7237 at 19.057 kb on + strand, within GFF7237 at 19.057 kb on + strand, within GFF7237 at 19.058 kb on - strand, within GFF7237 at 19.129 kb on + strand, within GFF7237 at 19.339 kb on + strand, within GFF7237 at 19.339 kb on + strand, within GFF7237 at 19.340 kb on - strand, within GFF7237 at 19.941 kb on - strand, within GFF7238 at 20.082 kb on + strand, within GFF7238 at 20.238 kb on + strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.239 kb on - strand at 20.239 kb on - strand at 20.510 kb on + strand, within GFF7239 at 20.511 kb on - strand, within GFF7239
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 17,583 - GFF7236 0.45 -0.9 18,014 + +2.6 18,066 + -1.0 18,067 - -1.2 18,180 - +2.0 18,415 + GFF7237 0.15 +0.8 18,415 + GFF7237 0.15 -0.3 19,057 + GFF7237 0.56 +1.2 19,057 + GFF7237 0.56 -0.1 19,058 - GFF7237 0.56 +1.1 19,129 + GFF7237 0.61 +1.0 19,339 + GFF7237 0.75 -1.8 19,339 + GFF7237 0.75 +0.8 19,340 - GFF7237 0.75 -2.1 19,941 - GFF7238 0.40 -1.4 20,082 + GFF7238 0.68 +0.3 20,238 + -0.4 20,238 + +1.5 20,238 + -0.0 20,238 + +0.2 20,238 + +0.5 20,238 + +3.8 20,239 - -0.5 20,239 - -1.1 20,510 + GFF7239 0.24 -0.9 20,511 - GFF7239 0.24 +1.5
Or see this region's nucleotide sequence