Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7151 and GFF7152 are separated by 146 nucleotides GFF7152 and GFF7153 overlap by 4 nucleotides GFF7153 and GFF7154 are separated by 35 nucleotides
GFF7151 - 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22), at 16,895 to 17,809
GFF7151
GFF7152 - no description, at 17,956 to 18,621
GFF7152
GFF7153 - no description, at 18,618 to 18,746
GFF7153
GFF7154 - Toxin HigB / Protein kinase domain of HipA, at 18,782 to 20,107
GFF7154
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 17.100 kb on + strand, within GFF7151 at 17.100 kb on + strand, within GFF7151 at 17.100 kb on + strand, within GFF7151 at 17.100 kb on + strand, within GFF7151 at 17.100 kb on + strand, within GFF7151 at 17.100 kb on + strand, within GFF7151 at 17.100 kb on + strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.101 kb on - strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.145 kb on + strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.146 kb on - strand, within GFF7151 at 17.256 kb on + strand, within GFF7151 at 17.256 kb on + strand, within GFF7151 at 17.382 kb on + strand, within GFF7151 at 17.382 kb on + strand, within GFF7151 at 17.382 kb on + strand, within GFF7151 at 17.383 kb on - strand, within GFF7151 at 17.383 kb on - strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.400 kb on + strand, within GFF7151 at 17.401 kb on - strand, within GFF7151 at 17.401 kb on - strand, within GFF7151 at 17.401 kb on - strand, within GFF7151 at 17.401 kb on - strand, within GFF7151 at 17.401 kb on - strand, within GFF7151 at 17.401 kb on - strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.475 kb on + strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.476 kb on - strand, within GFF7151 at 17.535 kb on + strand, within GFF7151 at 17.535 kb on + strand, within GFF7151 at 17.535 kb on + strand, within GFF7151 at 17.535 kb on + strand, within GFF7151 at 17.535 kb on + strand, within GFF7151 at 17.535 kb on + strand, within GFF7151 at 17.536 kb on - strand, within GFF7151 at 17.536 kb on - strand, within GFF7151 at 17.536 kb on - strand, within GFF7151 at 17.536 kb on - strand, within GFF7151 at 17.536 kb on - strand, within GFF7151 at 17.853 kb on + strand at 17.860 kb on - strand at 17.869 kb on - strand at 17.869 kb on - strand at 17.870 kb on + strand at 17.870 kb on + strand at 17.881 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.957 kb on + strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 17.958 kb on - strand at 18.057 kb on + strand, within GFF7152 at 18.060 kb on - strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.080 kb on + strand, within GFF7152 at 18.081 kb on - strand, within GFF7152 at 18.081 kb on - strand, within GFF7152 at 18.783 kb on + strand at 18.783 kb on + strand at 18.783 kb on + strand at 18.784 kb on - strand at 18.784 kb on - strand at 18.784 kb on - strand at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.014 kb on + strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.015 kb on - strand, within GFF7154 at 19.092 kb on + strand, within GFF7154 at 19.092 kb on + strand, within GFF7154 at 19.093 kb on - strand, within GFF7154 at 19.093 kb on - strand, within GFF7154 at 19.093 kb on - strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.116 kb on + strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.117 kb on - strand, within GFF7154 at 19.118 kb on + strand, within GFF7154 at 19.119 kb on - strand, within GFF7154 at 19.119 kb on - strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.134 kb on + strand, within GFF7154 at 19.135 kb on - strand, within GFF7154 at 19.135 kb on - strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.305 kb on + strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154 at 19.306 kb on - strand, within GFF7154
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 17,100 + GFF7151 0.22 -0.9 17,100 + GFF7151 0.22 -2.6 17,100 + GFF7151 0.22 -2.4 17,100 + GFF7151 0.22 -0.8 17,100 + GFF7151 0.22 +0.6 17,100 + GFF7151 0.22 +0.8 17,100 + GFF7151 0.22 -0.3 17,101 - GFF7151 0.23 -0.3 17,101 - GFF7151 0.23 +0.3 17,101 - GFF7151 0.23 +0.8 17,101 - GFF7151 0.23 -2.1 17,101 - GFF7151 0.23 -0.7 17,101 - GFF7151 0.23 -2.0 17,101 - GFF7151 0.23 -0.5 17,145 + GFF7151 0.27 -1.0 17,145 + GFF7151 0.27 -0.1 17,145 + GFF7151 0.27 -0.9 17,145 + GFF7151 0.27 -0.6 17,145 + GFF7151 0.27 +0.2 17,145 + GFF7151 0.27 -1.5 17,145 + GFF7151 0.27 +0.7 17,145 + GFF7151 0.27 -3.1 17,145 + GFF7151 0.27 +0.6 17,145 + GFF7151 0.27 +0.5 17,145 + GFF7151 0.27 +0.6 17,145 + GFF7151 0.27 -0.5 17,146 - GFF7151 0.27 +1.0 17,146 - GFF7151 0.27 +0.9 17,146 - GFF7151 0.27 -2.6 17,146 - GFF7151 0.27 -0.3 17,146 - GFF7151 0.27 -1.3 17,146 - GFF7151 0.27 -0.1 17,146 - GFF7151 0.27 +0.9 17,146 - GFF7151 0.27 -2.8 17,146 - GFF7151 0.27 +0.6 17,256 + GFF7151 0.39 +0.7 17,256 + GFF7151 0.39 -1.6 17,382 + GFF7151 0.53 +1.1 17,382 + GFF7151 0.53 +0.7 17,382 + GFF7151 0.53 -2.1 17,383 - GFF7151 0.53 -1.4 17,383 - GFF7151 0.53 +1.1 17,400 + GFF7151 0.55 -0.2 17,400 + GFF7151 0.55 -1.8 17,400 + GFF7151 0.55 +1.9 17,400 + GFF7151 0.55 -0.4 17,400 + GFF7151 0.55 +0.4 17,400 + GFF7151 0.55 -1.9 17,400 + GFF7151 0.55 +0.5 17,400 + GFF7151 0.55 -1.1 17,400 + GFF7151 0.55 -0.5 17,401 - GFF7151 0.55 +1.0 17,401 - GFF7151 0.55 +0.6 17,401 - GFF7151 0.55 +0.2 17,401 - GFF7151 0.55 -0.2 17,401 - GFF7151 0.55 -1.5 17,401 - GFF7151 0.55 +0.4 17,475 + GFF7151 0.63 -1.7 17,475 + GFF7151 0.63 -1.5 17,475 + GFF7151 0.63 +1.1 17,475 + GFF7151 0.63 -1.5 17,475 + GFF7151 0.63 -0.5 17,475 + GFF7151 0.63 -0.5 17,475 + GFF7151 0.63 +0.4 17,475 + GFF7151 0.63 +2.5 17,475 + GFF7151 0.63 -2.0 17,475 + GFF7151 0.63 -2.1 17,475 + GFF7151 0.63 -1.4 17,475 + GFF7151 0.63 -1.2 17,475 + GFF7151 0.63 +1.5 17,475 + GFF7151 0.63 -0.3 17,475 + GFF7151 0.63 -0.3 17,476 - GFF7151 0.63 -1.3 17,476 - GFF7151 0.63 -0.5 17,476 - GFF7151 0.63 +0.4 17,476 - GFF7151 0.63 +0.9 17,476 - GFF7151 0.63 -1.8 17,476 - GFF7151 0.63 -0.1 17,476 - GFF7151 0.63 +1.6 17,535 + GFF7151 0.70 -0.7 17,535 + GFF7151 0.70 -0.9 17,535 + GFF7151 0.70 -1.7 17,535 + GFF7151 0.70 -0.8 17,535 + GFF7151 0.70 -1.0 17,535 + GFF7151 0.70 -0.5 17,536 - GFF7151 0.70 +0.2 17,536 - GFF7151 0.70 -1.8 17,536 - GFF7151 0.70 +0.2 17,536 - GFF7151 0.70 +1.5 17,536 - GFF7151 0.70 -2.4 17,853 + -0.3 17,860 - +2.9 17,869 - +2.6 17,869 - +2.3 17,870 + -0.5 17,870 + +0.2 17,881 + -1.8 17,957 + +1.4 17,957 + -0.3 17,957 + -2.1 17,957 + +1.3 17,957 + +0.4 17,957 + +0.9 17,957 + +0.6 17,957 + +1.6 17,957 + +1.7 17,958 - -1.9 17,958 - -2.1 17,958 - -0.0 17,958 - -0.7 17,958 - +0.4 17,958 - +0.9 17,958 - +1.0 17,958 - -3.0 17,958 - +0.6 17,958 - +1.4 18,057 + GFF7152 0.15 +0.3 18,060 - GFF7152 0.16 +1.5 18,080 + GFF7152 0.19 +0.3 18,080 + GFF7152 0.19 -0.5 18,080 + GFF7152 0.19 +2.1 18,080 + GFF7152 0.19 -0.7 18,080 + GFF7152 0.19 +2.3 18,080 + GFF7152 0.19 +1.0 18,080 + GFF7152 0.19 -2.0 18,081 - GFF7152 0.19 -3.0 18,081 - GFF7152 0.19 -2.4 18,783 + -1.2 18,783 + -2.0 18,783 + +0.7 18,784 - -2.7 18,784 - -0.0 18,784 - -0.5 19,014 + GFF7154 0.17 -0.8 19,014 + GFF7154 0.17 +0.9 19,014 + GFF7154 0.17 +4.0 19,014 + GFF7154 0.17 +0.2 19,014 + GFF7154 0.17 +0.1 19,014 + GFF7154 0.17 +0.4 19,014 + GFF7154 0.17 +0.2 19,014 + GFF7154 0.17 +0.7 19,014 + GFF7154 0.17 -2.3 19,014 + GFF7154 0.17 +1.1 19,014 + GFF7154 0.17 -3.1 19,014 + GFF7154 0.17 -0.1 19,015 - GFF7154 0.18 +0.8 19,015 - GFF7154 0.18 -0.7 19,015 - GFF7154 0.18 +0.8 19,015 - GFF7154 0.18 -0.7 19,015 - GFF7154 0.18 -0.7 19,015 - GFF7154 0.18 +1.6 19,015 - GFF7154 0.18 -1.5 19,015 - GFF7154 0.18 +0.9 19,015 - GFF7154 0.18 +1.7 19,015 - GFF7154 0.18 +0.1 19,015 - GFF7154 0.18 -0.7 19,015 - GFF7154 0.18 -1.9 19,015 - GFF7154 0.18 -1.1 19,015 - GFF7154 0.18 -1.7 19,015 - GFF7154 0.18 -0.8 19,015 - GFF7154 0.18 -1.7 19,015 - GFF7154 0.18 -0.7 19,092 + GFF7154 0.23 -3.2 19,092 + GFF7154 0.23 +1.2 19,093 - GFF7154 0.23 +0.6 19,093 - GFF7154 0.23 -1.2 19,093 - GFF7154 0.23 +0.5 19,116 + GFF7154 0.25 +0.5 19,116 + GFF7154 0.25 -2.1 19,116 + GFF7154 0.25 -2.8 19,116 + GFF7154 0.25 -0.6 19,116 + GFF7154 0.25 -0.1 19,116 + GFF7154 0.25 -1.2 19,117 - GFF7154 0.25 +0.4 19,117 - GFF7154 0.25 +2.5 19,117 - GFF7154 0.25 +0.2 19,117 - GFF7154 0.25 +1.2 19,117 - GFF7154 0.25 +0.2 19,117 - GFF7154 0.25 -1.1 19,117 - GFF7154 0.25 -0.4 19,117 - GFF7154 0.25 +0.9 19,117 - GFF7154 0.25 -2.1 19,117 - GFF7154 0.25 -0.7 19,118 + GFF7154 0.25 -1.2 19,119 - GFF7154 0.25 -0.2 19,119 - GFF7154 0.25 +1.7 19,134 + GFF7154 0.27 +0.5 19,134 + GFF7154 0.27 -2.0 19,134 + GFF7154 0.27 +3.5 19,134 + GFF7154 0.27 -0.3 19,134 + GFF7154 0.27 +1.4 19,134 + GFF7154 0.27 -0.1 19,134 + GFF7154 0.27 -0.3 19,134 + GFF7154 0.27 -2.7 19,134 + GFF7154 0.27 -0.1 19,134 + GFF7154 0.27 -2.4 19,134 + GFF7154 0.27 +0.5 19,135 - GFF7154 0.27 -0.2 19,135 - GFF7154 0.27 +0.3 19,305 + GFF7154 0.39 -2.1 19,305 + GFF7154 0.39 -1.7 19,305 + GFF7154 0.39 -1.4 19,305 + GFF7154 0.39 -0.2 19,305 + GFF7154 0.39 +0.1 19,305 + GFF7154 0.39 +0.8 19,305 + GFF7154 0.39 +0.5 19,305 + GFF7154 0.39 -1.8 19,305 + GFF7154 0.39 +0.5 19,306 - GFF7154 0.40 +0.4 19,306 - GFF7154 0.40 +0.6 19,306 - GFF7154 0.40 +0.1 19,306 - GFF7154 0.40 +1.5 19,306 - GFF7154 0.40 -0.5 19,306 - GFF7154 0.40 -1.0
Or see this region's nucleotide sequence