Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7037 and GFF7039 are separated by 14 nucleotides GFF7039 and GFF7040 are separated by 10 nucleotides GFF7040 and GFF7041 overlap by 4 nucleotides GFF7041 and GFF7042 are separated by 87 nucleotides GFF7042 and GFF7043 are separated by 9 nucleotides
GFF7037 - Uncharacterized MFS-type transporter, at 2,716 to 3,918
GFF7037
GFF7039 - Ferredoxin, at 3,933 to 4,220
GFF7039
GFF7040 - FIG00361340: hypothetical protein, at 4,231 to 4,512
GFF7040
GFF7041 - hypothetical protein, at 4,509 to 4,658
GFF7041
GFF7042 - Acetyltransferase, GNAT family, at 4,746 to 5,264
GFF7042
GFF7043 - Putative transmembrane protein, at 5,274 to 5,957
GFF7043
Position (kb) 4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3.247 kb on + strand, within GFF7037 at 3.247 kb on + strand, within GFF7037 at 3.247 kb on + strand, within GFF7037 at 3.248 kb on - strand, within GFF7037 at 3.248 kb on - strand, within GFF7037 at 3.253 kb on + strand, within GFF7037 at 3.253 kb on + strand, within GFF7037 at 3.253 kb on + strand, within GFF7037 at 3.253 kb on + strand, within GFF7037 at 3.254 kb on - strand, within GFF7037 at 3.254 kb on - strand, within GFF7037 at 3.254 kb on - strand, within GFF7037 at 3.254 kb on - strand, within GFF7037 at 3.254 kb on - strand, within GFF7037 at 3.400 kb on + strand, within GFF7037 at 3.400 kb on + strand, within GFF7037 at 3.400 kb on + strand, within GFF7037 at 3.400 kb on + strand, within GFF7037 at 3.400 kb on + strand, within GFF7037 at 3.400 kb on + strand, within GFF7037 at 3.401 kb on - strand, within GFF7037 at 3.401 kb on - strand, within GFF7037 at 3.401 kb on - strand, within GFF7037 at 3.917 kb on - strand at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.289 kb on + strand, within GFF7040 at 4.290 kb on - strand, within GFF7040 at 4.290 kb on - strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.412 kb on + strand, within GFF7040 at 4.413 kb on - strand, within GFF7040 at 4.413 kb on - strand, within GFF7040 at 4.667 kb on - strand at 4.677 kb on + strand at 4.678 kb on - strand at 4.717 kb on + strand at 4.718 kb on - strand at 4.830 kb on + strand, within GFF7042 at 4.830 kb on + strand, within GFF7042 at 4.831 kb on - strand, within GFF7042 at 4.831 kb on - strand, within GFF7042 at 4.911 kb on + strand, within GFF7042 at 4.911 kb on + strand, within GFF7042 at 4.911 kb on + strand, within GFF7042 at 4.912 kb on - strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.028 kb on + strand, within GFF7042 at 5.029 kb on - strand, within GFF7042
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 3,247 + GFF7037 0.44 -0.1 3,247 + GFF7037 0.44 -1.3 3,247 + GFF7037 0.44 +0.6 3,248 - GFF7037 0.44 -0.5 3,248 - GFF7037 0.44 -1.9 3,253 + GFF7037 0.45 +1.4 3,253 + GFF7037 0.45 -1.2 3,253 + GFF7037 0.45 -2.0 3,253 + GFF7037 0.45 -0.1 3,254 - GFF7037 0.45 -1.6 3,254 - GFF7037 0.45 -2.6 3,254 - GFF7037 0.45 -3.1 3,254 - GFF7037 0.45 +0.3 3,254 - GFF7037 0.45 +0.6 3,400 + GFF7037 0.57 -1.7 3,400 + GFF7037 0.57 -1.6 3,400 + GFF7037 0.57 -1.2 3,400 + GFF7037 0.57 +0.2 3,400 + GFF7037 0.57 -0.8 3,400 + GFF7037 0.57 -0.7 3,401 - GFF7037 0.57 +0.2 3,401 - GFF7037 0.57 -0.8 3,401 - GFF7037 0.57 -1.0 3,917 - +0.6 4,289 + GFF7040 0.21 -1.6 4,289 + GFF7040 0.21 -1.2 4,289 + GFF7040 0.21 +1.2 4,289 + GFF7040 0.21 -1.9 4,289 + GFF7040 0.21 +2.9 4,289 + GFF7040 0.21 -0.8 4,290 - GFF7040 0.21 +1.6 4,290 - GFF7040 0.21 -0.4 4,412 + GFF7040 0.64 +3.4 4,412 + GFF7040 0.64 +0.4 4,412 + GFF7040 0.64 -0.9 4,412 + GFF7040 0.64 -0.1 4,412 + GFF7040 0.64 -0.9 4,412 + GFF7040 0.64 -2.8 4,413 - GFF7040 0.65 -0.9 4,413 - GFF7040 0.65 -0.4 4,667 - -0.0 4,677 + -2.8 4,678 - -1.0 4,717 + -0.2 4,718 - -1.0 4,830 + GFF7042 0.16 +0.2 4,830 + GFF7042 0.16 -2.2 4,831 - GFF7042 0.16 -1.2 4,831 - GFF7042 0.16 -2.1 4,911 + GFF7042 0.32 -0.6 4,911 + GFF7042 0.32 -2.3 4,911 + GFF7042 0.32 -0.9 4,912 - GFF7042 0.32 +0.2 5,028 + GFF7042 0.54 -0.3 5,028 + GFF7042 0.54 +0.2 5,028 + GFF7042 0.54 -1.0 5,028 + GFF7042 0.54 -2.5 5,028 + GFF7042 0.54 -1.9 5,028 + GFF7042 0.54 +0.0 5,029 - GFF7042 0.55 -0.5
Or see this region's nucleotide sequence