Strain Fitness in Variovorax sp. SCN45 around GFF6901

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6900 and GFF6901 overlap by 11 nucleotidesGFF6901 and GFF6902 are separated by 108 nucleotidesGFF6902 and GFF6903 are separated by 92 nucleotides GFF6900 - Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-), at 35,158 to 36,435 GFF6900 GFF6901 - no description, at 36,425 to 37,009 GFF6901 GFF6902 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 37,118 to 37,915 GFF6902 GFF6903 - Transcriptional regulator, LysR family, at 38,008 to 38,916 GFF6903 Position (kb) 36 37 38Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 35.494 kb on + strand, within GFF6900at 35.494 kb on + strand, within GFF6900at 35.494 kb on + strand, within GFF6900at 35.495 kb on - strand, within GFF6900at 35.495 kb on - strand, within GFF6900at 35.581 kb on + strand, within GFF6900at 35.581 kb on + strand, within GFF6900at 35.581 kb on + strand, within GFF6900at 35.581 kb on + strand, within GFF6900at 35.581 kb on + strand, within GFF6900at 35.582 kb on - strand, within GFF6900at 35.582 kb on - strand, within GFF6900at 35.582 kb on - strand, within GFF6900at 35.582 kb on - strand, within GFF6900at 35.582 kb on - strand, within GFF6900at 35.582 kb on - strand, within GFF6900at 36.076 kb on + strand, within GFF6900at 36.076 kb on + strand, within GFF6900at 36.076 kb on + strand, within GFF6900at 36.076 kb on + strand, within GFF6900at 36.076 kb on + strand, within GFF6900at 36.076 kb on + strand, within GFF6900at 36.076 kb on + strand, within GFF6900at 36.077 kb on - strand, within GFF6900at 36.077 kb on - strand, within GFF6900at 36.077 kb on - strand, within GFF6900at 36.077 kb on - strand, within GFF6900at 36.085 kb on + strand, within GFF6900at 36.085 kb on + strand, within GFF6900at 36.085 kb on + strand, within GFF6900at 36.085 kb on + strand, within GFF6900at 36.085 kb on + strand, within GFF6900at 36.085 kb on + strand, within GFF6900at 36.085 kb on + strand, within GFF6900at 36.085 kb on + strand, within GFF6900at 36.085 kb on + strand, within GFF6900at 36.085 kb on + strand, within GFF6900at 36.086 kb on - strand, within GFF6900at 36.086 kb on - strand, within GFF6900at 36.086 kb on - strand, within GFF6900at 36.110 kb on - strand, within GFF6900at 36.110 kb on - strand, within GFF6900at 36.265 kb on + strand, within GFF6900at 36.266 kb on - strand, within GFF6900at 36.266 kb on - strand, within GFF6900at 36.286 kb on + strand, within GFF6900at 36.286 kb on + strand, within GFF6900at 36.287 kb on - strand, within GFF6900at 36.287 kb on - strand, within GFF6900at 36.371 kb on + strandat 36.371 kb on + strandat 36.371 kb on + strandat 36.371 kb on + strandat 36.371 kb on + strandat 36.371 kb on + strandat 36.372 kb on - strandat 36.605 kb on + strand, within GFF6901at 36.605 kb on + strand, within GFF6901at 36.605 kb on + strand, within GFF6901at 36.605 kb on + strand, within GFF6901at 36.605 kb on + strand, within GFF6901at 36.605 kb on + strand, within GFF6901at 36.605 kb on + strand, within GFF6901at 36.605 kb on + strand, within GFF6901at 36.605 kb on + strand, within GFF6901at 36.605 kb on + strand, within GFF6901at 36.605 kb on + strand, within GFF6901at 36.605 kb on + strand, within GFF6901at 36.606 kb on - strand, within GFF6901at 36.606 kb on - strand, within GFF6901at 36.606 kb on - strand, within GFF6901at 36.606 kb on - strand, within GFF6901at 36.606 kb on - strand, within GFF6901at 36.606 kb on - strand, within GFF6901at 36.606 kb on - strand, within GFF6901at 36.680 kb on + strand, within GFF6901at 36.680 kb on + strand, within GFF6901at 36.680 kb on + strand, within GFF6901at 36.681 kb on - strand, within GFF6901at 36.681 kb on - strand, within GFF6901at 36.731 kb on + strand, within GFF6901at 36.731 kb on + strand, within GFF6901at 36.731 kb on + strand, within GFF6901at 36.731 kb on + strand, within GFF6901at 36.732 kb on - strand, within GFF6901at 36.854 kb on + strand, within GFF6901at 36.854 kb on + strand, within GFF6901at 36.855 kb on - strand, within GFF6901at 36.855 kb on - strand, within GFF6901at 36.855 kb on - strand, within GFF6901at 36.855 kb on - strand, within GFF6901at 36.855 kb on - strand, within GFF6901at 36.855 kb on - strand, within GFF6901at 37.146 kb on + strandat 37.146 kb on + strandat 37.146 kb on + strandat 37.146 kb on + strandat 37.146 kb on + strandat 37.146 kb on + strandat 37.147 kb on - strandat 37.147 kb on - strandat 37.147 kb on - strandat 37.147 kb on - strandat 37.147 kb on - strandat 37.147 kb on - strandat 37.475 kb on + strand, within GFF6902at 37.475 kb on + strand, within GFF6902at 37.475 kb on + strand, within GFF6902at 37.475 kb on + strand, within GFF6902at 37.475 kb on + strand, within GFF6902at 37.475 kb on + strand, within GFF6902at 37.475 kb on + strand, within GFF6902at 37.476 kb on - strand, within GFF6902at 37.476 kb on - strand, within GFF6902at 37.476 kb on - strand, within GFF6902at 37.476 kb on - strand, within GFF6902at 37.476 kb on - strand, within GFF6902at 37.476 kb on - strand, within GFF6902at 37.476 kb on - strand, within GFF6902at 37.476 kb on - strand, within GFF6902at 37.484 kb on + strand, within GFF6902at 37.484 kb on + strand, within GFF6902at 37.484 kb on + strand, within GFF6902at 37.484 kb on + strand, within GFF6902at 37.484 kb on + strand, within GFF6902at 37.485 kb on - strand, within GFF6902at 37.485 kb on - strand, within GFF6902at 37.485 kb on - strand, within GFF6902at 37.485 kb on - strand, within GFF6902at 37.485 kb on - strand, within GFF6902at 37.485 kb on - strand, within GFF6902at 37.485 kb on - strand, within GFF6902at 37.485 kb on - strand, within GFF6902at 37.485 kb on - strand, within GFF6902at 37.485 kb on - strand, within GFF6902at 37.649 kb on + strand, within GFF6902at 37.649 kb on + strand, within GFF6902at 37.649 kb on + strand, within GFF6902at 37.650 kb on - strand, within GFF6902at 37.650 kb on - strand, within GFF6902at 37.650 kb on - strand, within GFF6902at 37.862 kb on + strandat 37.862 kb on + strandat 37.862 kb on + strandat 37.862 kb on + strandat 37.863 kb on - strandat 37.863 kb on - strandat 37.863 kb on - strandat 37.863 kb on - strandat 37.863 kb on - strandat 37.863 kb on - strandat 37.863 kb on - strandat 37.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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35,494 + GFF6900 0.26 -0.6
35,494 + GFF6900 0.26 +1.1
35,494 + GFF6900 0.26 -0.4
35,495 - GFF6900 0.26 -3.5
35,495 - GFF6900 0.26 +2.1
35,581 + GFF6900 0.33 -0.2
35,581 + GFF6900 0.33 -0.6
35,581 + GFF6900 0.33 -3.5
35,581 + GFF6900 0.33 +1.4
35,581 + GFF6900 0.33 +0.2
35,582 - GFF6900 0.33 -1.7
35,582 - GFF6900 0.33 -0.8
35,582 - GFF6900 0.33 +0.7
35,582 - GFF6900 0.33 +0.5
35,582 - GFF6900 0.33 -0.4
35,582 - GFF6900 0.33 -0.8
36,076 + GFF6900 0.72 -1.7
36,076 + GFF6900 0.72 +1.2
36,076 + GFF6900 0.72 +0.6
36,076 + GFF6900 0.72 -0.8
36,076 + GFF6900 0.72 -0.7
36,076 + GFF6900 0.72 +2.2
36,076 + GFF6900 0.72 -0.4
36,077 - GFF6900 0.72 -1.4
36,077 - GFF6900 0.72 +0.8
36,077 - GFF6900 0.72 +1.0
36,077 - GFF6900 0.72 -0.4
36,085 + GFF6900 0.73 +0.7
36,085 + GFF6900 0.73 +0.4
36,085 + GFF6900 0.73 -0.8
36,085 + GFF6900 0.73 -0.9
36,085 + GFF6900 0.73 -0.8
36,085 + GFF6900 0.73 +1.6
36,085 + GFF6900 0.73 -2.9
36,085 + GFF6900 0.73 -0.6
36,085 + GFF6900 0.73 -0.6
36,085 + GFF6900 0.73 -2.5
36,086 - GFF6900 0.73 -1.4
36,086 - GFF6900 0.73 -1.0
36,086 - GFF6900 0.73 -2.3
36,110 - GFF6900 0.74 +0.2
36,110 - GFF6900 0.74 +0.5
36,265 + GFF6900 0.87 -0.8
36,266 - GFF6900 0.87 -1.5
36,266 - GFF6900 0.87 +1.2
36,286 + GFF6900 0.88 -1.1
36,286 + GFF6900 0.88 -0.1
36,287 - GFF6900 0.88 -1.4
36,287 - GFF6900 0.88 -0.9
36,371 + +1.2
36,371 + +0.6
36,371 + +0.1
36,371 + -1.1
36,371 + -2.5
36,371 + +0.6
36,372 - -2.1
36,605 + GFF6901 0.31 -2.8
36,605 + GFF6901 0.31 +0.2
36,605 + GFF6901 0.31 +1.3
36,605 + GFF6901 0.31 +0.8
36,605 + GFF6901 0.31 +0.2
36,605 + GFF6901 0.31 -0.7
36,605 + GFF6901 0.31 +1.9
36,605 + GFF6901 0.31 -4.4
36,605 + GFF6901 0.31 +1.4
36,605 + GFF6901 0.31 -2.4
36,605 + GFF6901 0.31 -1.1
36,605 + GFF6901 0.31 +1.4
36,606 - GFF6901 0.31 -1.8
36,606 - GFF6901 0.31 +0.5
36,606 - GFF6901 0.31 -2.1
36,606 - GFF6901 0.31 -1.1
36,606 - GFF6901 0.31 +0.7
36,606 - GFF6901 0.31 +0.1
36,606 - GFF6901 0.31 -1.1
36,680 + GFF6901 0.44 +1.0
36,680 + GFF6901 0.44 -2.0
36,680 + GFF6901 0.44 -1.1
36,681 - GFF6901 0.44 -1.0
36,681 - GFF6901 0.44 +1.9
36,731 + GFF6901 0.52 +2.2
36,731 + GFF6901 0.52 -0.6
36,731 + GFF6901 0.52 -0.3
36,731 + GFF6901 0.52 -0.1
36,732 - GFF6901 0.52 +0.2
36,854 + GFF6901 0.73 -0.5
36,854 + GFF6901 0.73 -1.0
36,855 - GFF6901 0.74 +2.9
36,855 - GFF6901 0.74 +0.2
36,855 - GFF6901 0.74 -0.4
36,855 - GFF6901 0.74 +3.8
36,855 - GFF6901 0.74 -3.2
36,855 - GFF6901 0.74 +2.4
37,146 + +0.6
37,146 + +0.3
37,146 + -0.1
37,146 + +0.8
37,146 + -0.4
37,146 + -0.5
37,147 - +0.0
37,147 - -0.9
37,147 - -0.1
37,147 - +0.3
37,147 - +0.2
37,147 - +0.8
37,475 + GFF6902 0.45 -1.3
37,475 + GFF6902 0.45 -0.2
37,475 + GFF6902 0.45 -2.1
37,475 + GFF6902 0.45 -0.6
37,475 + GFF6902 0.45 -1.4
37,475 + GFF6902 0.45 -0.7
37,475 + GFF6902 0.45 -0.5
37,476 - GFF6902 0.45 -1.0
37,476 - GFF6902 0.45 -0.4
37,476 - GFF6902 0.45 +1.4
37,476 - GFF6902 0.45 +0.7
37,476 - GFF6902 0.45 -0.3
37,476 - GFF6902 0.45 -0.6
37,476 - GFF6902 0.45 -1.4
37,476 - GFF6902 0.45 -3.4
37,484 + GFF6902 0.46 +0.9
37,484 + GFF6902 0.46 +2.6
37,484 + GFF6902 0.46 -0.6
37,484 + GFF6902 0.46 +0.6
37,484 + GFF6902 0.46 -1.7
37,485 - GFF6902 0.46 +0.4
37,485 - GFF6902 0.46 -1.6
37,485 - GFF6902 0.46 -0.0
37,485 - GFF6902 0.46 -2.4
37,485 - GFF6902 0.46 -1.7
37,485 - GFF6902 0.46 -1.4
37,485 - GFF6902 0.46 -0.5
37,485 - GFF6902 0.46 +0.6
37,485 - GFF6902 0.46 +1.0
37,485 - GFF6902 0.46 -0.4
37,649 + GFF6902 0.67 +0.0
37,649 + GFF6902 0.67 +0.6
37,649 + GFF6902 0.67 -2.0
37,650 - GFF6902 0.67 -0.7
37,650 - GFF6902 0.67 -0.8
37,650 - GFF6902 0.67 -1.3
37,862 + +0.4
37,862 + +3.3
37,862 + +0.3
37,862 + -0.6
37,863 - +0.5
37,863 - -1.3
37,863 - -2.4
37,863 - -0.8
37,863 - -1.3
37,863 - -0.0
37,863 - -0.6
37,863 - -1.6

Or see this region's nucleotide sequence