Strain Fitness in Variovorax sp. SCN45 around GFF6889

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6888 and GFF6889 are separated by 53 nucleotidesGFF6889 and GFF6890 are separated by 34 nucleotidesGFF6890 and GFF6891 are separated by 10 nucleotides GFF6888 - Permease of the drug/metabolite transporter (DMT) superfamily, at 21,635 to 22,618 GFF6888 GFF6889 - Alpha-aminoadipate aminotransferase (EC 2.6.1.39) @ Leucine transaminase (EC 2.6.1.6) @ Valine transaminase, at 22,672 to 23,874 GFF6889 GFF6890 - Threonine efflux protein, at 23,909 to 24,547 GFF6890 GFF6891 - Phenazine biosynthesis protein PhzF like, at 24,558 to 25,394 GFF6891 Position (kb) 22 23 24Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 21.917 kb on + strand, within GFF6888at 21.918 kb on - strand, within GFF6888at 21.918 kb on - strand, within GFF6888at 22.166 kb on + strand, within GFF6888at 22.166 kb on + strand, within GFF6888at 22.166 kb on + strand, within GFF6888at 22.166 kb on + strand, within GFF6888at 22.167 kb on - strand, within GFF6888at 22.167 kb on - strand, within GFF6888at 22.167 kb on - strand, within GFF6888at 22.167 kb on - strand, within GFF6888at 22.167 kb on - strand, within GFF6888at 22.167 kb on - strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.172 kb on + strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.173 kb on - strand, within GFF6888at 22.258 kb on + strand, within GFF6888at 22.316 kb on + strand, within GFF6888at 22.316 kb on + strand, within GFF6888at 22.316 kb on + strand, within GFF6888at 22.316 kb on + strand, within GFF6888at 22.316 kb on + strand, within GFF6888at 22.317 kb on - strand, within GFF6888at 22.317 kb on - strand, within GFF6888at 22.317 kb on - strand, within GFF6888at 22.317 kb on - strand, within GFF6888at 22.317 kb on - strand, within GFF6888at 22.828 kb on + strand, within GFF6889at 22.832 kb on + strand, within GFF6889at 22.832 kb on + strand, within GFF6889at 22.832 kb on + strand, within GFF6889at 22.832 kb on + strand, within GFF6889at 22.832 kb on + strand, within GFF6889at 22.832 kb on + strand, within GFF6889at 22.833 kb on - strand, within GFF6889at 22.833 kb on - strand, within GFF6889at 22.833 kb on - strand, within GFF6889at 22.833 kb on - strand, within GFF6889at 22.833 kb on - strand, within GFF6889at 22.864 kb on + strand, within GFF6889at 22.864 kb on + strand, within GFF6889at 22.864 kb on + strand, within GFF6889at 22.864 kb on + strand, within GFF6889at 22.864 kb on + strand, within GFF6889at 22.864 kb on + strand, within GFF6889at 22.864 kb on + strand, within GFF6889at 22.865 kb on - strand, within GFF6889at 22.865 kb on - strand, within GFF6889at 22.865 kb on - strand, within GFF6889at 22.882 kb on + strand, within GFF6889at 22.883 kb on - strand, within GFF6889at 23.035 kb on + strand, within GFF6889at 23.035 kb on + strand, within GFF6889at 23.035 kb on + strand, within GFF6889at 23.035 kb on + strand, within GFF6889at 23.035 kb on + strand, within GFF6889at 23.035 kb on + strand, within GFF6889at 23.035 kb on + strand, within GFF6889at 23.035 kb on + strand, within GFF6889at 23.035 kb on + strand, within GFF6889at 23.036 kb on - strand, within GFF6889at 23.036 kb on - strand, within GFF6889at 23.036 kb on - strand, within GFF6889at 23.036 kb on - strand, within GFF6889at 23.155 kb on + strand, within GFF6889at 23.156 kb on - strand, within GFF6889at 23.156 kb on - strand, within GFF6889at 23.338 kb on + strand, within GFF6889at 23.338 kb on + strand, within GFF6889at 23.338 kb on + strand, within GFF6889at 23.338 kb on + strand, within GFF6889at 23.338 kb on + strand, within GFF6889at 23.338 kb on + strand, within GFF6889at 23.338 kb on + strand, within GFF6889at 23.338 kb on + strand, within GFF6889at 23.338 kb on + strand, within GFF6889at 23.339 kb on - strand, within GFF6889at 23.339 kb on - strand, within GFF6889at 23.339 kb on - strand, within GFF6889at 23.339 kb on - strand, within GFF6889at 23.339 kb on - strand, within GFF6889at 23.410 kb on + strand, within GFF6889at 23.411 kb on - strand, within GFF6889at 23.411 kb on - strand, within GFF6889at 23.411 kb on - strand, within GFF6889at 23.411 kb on - strand, within GFF6889at 23.536 kb on + strand, within GFF6889at 23.536 kb on + strand, within GFF6889at 23.536 kb on + strand, within GFF6889at 23.536 kb on + strand, within GFF6889at 23.536 kb on + strand, within GFF6889at 23.537 kb on - strand, within GFF6889at 23.537 kb on - strand, within GFF6889at 23.537 kb on - strand, within GFF6889at 23.722 kb on + strand, within GFF6889at 23.723 kb on - strand, within GFF6889at 23.723 kb on - strand, within GFF6889at 23.723 kb on - strand, within GFF6889at 23.723 kb on - strand, within GFF6889at 23.723 kb on - strand, within GFF6889at 24.140 kb on + strand, within GFF6890at 24.140 kb on + strand, within GFF6890at 24.155 kb on + strand, within GFF6890at 24.155 kb on + strand, within GFF6890at 24.155 kb on + strand, within GFF6890at 24.155 kb on + strand, within GFF6890at 24.156 kb on - strand, within GFF6890at 24.156 kb on - strand, within GFF6890at 24.156 kb on - strand, within GFF6890at 24.156 kb on - strand, within GFF6890at 24.156 kb on - strand, within GFF6890at 24.156 kb on - strand, within GFF6890at 24.156 kb on - strand, within GFF6890at 24.156 kb on - strand, within GFF6890at 24.735 kb on + strand, within GFF6891at 24.735 kb on + strand, within GFF6891at 24.735 kb on + strand, within GFF6891at 24.736 kb on - strand, within GFF6891

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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21,917 + GFF6888 0.29 -1.1
21,918 - GFF6888 0.29 -2.8
21,918 - GFF6888 0.29 +2.2
22,166 + GFF6888 0.54 -2.2
22,166 + GFF6888 0.54 -1.5
22,166 + GFF6888 0.54 +0.7
22,166 + GFF6888 0.54 +0.2
22,167 - GFF6888 0.54 -1.9
22,167 - GFF6888 0.54 -0.1
22,167 - GFF6888 0.54 -0.0
22,167 - GFF6888 0.54 +0.5
22,167 - GFF6888 0.54 -3.7
22,167 - GFF6888 0.54 -1.6
22,172 + GFF6888 0.55 -1.4
22,172 + GFF6888 0.55 +0.1
22,172 + GFF6888 0.55 -1.2
22,172 + GFF6888 0.55 +0.6
22,172 + GFF6888 0.55 -0.6
22,172 + GFF6888 0.55 +1.2
22,172 + GFF6888 0.55 +0.1
22,172 + GFF6888 0.55 -1.3
22,172 + GFF6888 0.55 -2.5
22,173 - GFF6888 0.55 -2.8
22,173 - GFF6888 0.55 +0.3
22,173 - GFF6888 0.55 +0.0
22,173 - GFF6888 0.55 -0.6
22,173 - GFF6888 0.55 -0.3
22,173 - GFF6888 0.55 -1.7
22,173 - GFF6888 0.55 -1.2
22,173 - GFF6888 0.55 -0.3
22,258 + GFF6888 0.63 -0.8
22,316 + GFF6888 0.69 -1.7
22,316 + GFF6888 0.69 -0.6
22,316 + GFF6888 0.69 -0.5
22,316 + GFF6888 0.69 -2.0
22,316 + GFF6888 0.69 -0.9
22,317 - GFF6888 0.69 +0.4
22,317 - GFF6888 0.69 +0.4
22,317 - GFF6888 0.69 -1.3
22,317 - GFF6888 0.69 -0.8
22,317 - GFF6888 0.69 +0.2
22,828 + GFF6889 0.13 -1.1
22,832 + GFF6889 0.13 -1.8
22,832 + GFF6889 0.13 -1.7
22,832 + GFF6889 0.13 -1.4
22,832 + GFF6889 0.13 +2.2
22,832 + GFF6889 0.13 -0.1
22,832 + GFF6889 0.13 -2.4
22,833 - GFF6889 0.13 -1.0
22,833 - GFF6889 0.13 -2.5
22,833 - GFF6889 0.13 -3.4
22,833 - GFF6889 0.13 +2.5
22,833 - GFF6889 0.13 +1.0
22,864 + GFF6889 0.16 +0.9
22,864 + GFF6889 0.16 +0.4
22,864 + GFF6889 0.16 -2.0
22,864 + GFF6889 0.16 -0.8
22,864 + GFF6889 0.16 -1.3
22,864 + GFF6889 0.16 -1.5
22,864 + GFF6889 0.16 +0.4
22,865 - GFF6889 0.16 -1.7
22,865 - GFF6889 0.16 +0.5
22,865 - GFF6889 0.16 -0.2
22,882 + GFF6889 0.17 +0.1
22,883 - GFF6889 0.18 -1.3
23,035 + GFF6889 0.30 -1.1
23,035 + GFF6889 0.30 -0.3
23,035 + GFF6889 0.30 +2.7
23,035 + GFF6889 0.30 +0.3
23,035 + GFF6889 0.30 -0.6
23,035 + GFF6889 0.30 +1.2
23,035 + GFF6889 0.30 -2.3
23,035 + GFF6889 0.30 -2.5
23,035 + GFF6889 0.30 -1.6
23,036 - GFF6889 0.30 +1.7
23,036 - GFF6889 0.30 -1.0
23,036 - GFF6889 0.30 +4.0
23,036 - GFF6889 0.30 +1.2
23,155 + GFF6889 0.40 +2.2
23,156 - GFF6889 0.40 -0.4
23,156 - GFF6889 0.40 +0.7
23,338 + GFF6889 0.55 +1.2
23,338 + GFF6889 0.55 -0.8
23,338 + GFF6889 0.55 -1.7
23,338 + GFF6889 0.55 +1.0
23,338 + GFF6889 0.55 +1.1
23,338 + GFF6889 0.55 -1.0
23,338 + GFF6889 0.55 -0.1
23,338 + GFF6889 0.55 -2.3
23,338 + GFF6889 0.55 -2.6
23,339 - GFF6889 0.55 +0.8
23,339 - GFF6889 0.55 +1.5
23,339 - GFF6889 0.55 +0.6
23,339 - GFF6889 0.55 +0.3
23,339 - GFF6889 0.55 -0.6
23,410 + GFF6889 0.61 +0.4
23,411 - GFF6889 0.61 -2.1
23,411 - GFF6889 0.61 -0.8
23,411 - GFF6889 0.61 +1.8
23,411 - GFF6889 0.61 -0.5
23,536 + GFF6889 0.72 -0.9
23,536 + GFF6889 0.72 -0.0
23,536 + GFF6889 0.72 +1.2
23,536 + GFF6889 0.72 +0.2
23,536 + GFF6889 0.72 -0.8
23,537 - GFF6889 0.72 +2.2
23,537 - GFF6889 0.72 +1.0
23,537 - GFF6889 0.72 -0.6
23,722 + GFF6889 0.87 -1.7
23,723 - GFF6889 0.87 +0.4
23,723 - GFF6889 0.87 -1.7
23,723 - GFF6889 0.87 -1.0
23,723 - GFF6889 0.87 -1.8
23,723 - GFF6889 0.87 -0.5
24,140 + GFF6890 0.36 -1.1
24,140 + GFF6890 0.36 +0.2
24,155 + GFF6890 0.38 -0.0
24,155 + GFF6890 0.38 -2.1
24,155 + GFF6890 0.38 +1.7
24,155 + GFF6890 0.38 -0.6
24,156 - GFF6890 0.39 -4.2
24,156 - GFF6890 0.39 +0.4
24,156 - GFF6890 0.39 +1.7
24,156 - GFF6890 0.39 -0.6
24,156 - GFF6890 0.39 +1.3
24,156 - GFF6890 0.39 +0.5
24,156 - GFF6890 0.39 -3.7
24,156 - GFF6890 0.39 -1.7
24,735 + GFF6891 0.21 -1.7
24,735 + GFF6891 0.21 -3.3
24,735 + GFF6891 0.21 -0.3
24,736 - GFF6891 0.21 -2.1

Or see this region's nucleotide sequence