Strain Fitness in Variovorax sp. SCN45 around GFF677

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF676 and GFF677 are separated by 16 nucleotidesGFF677 and GFF678 are separated by 74 nucleotides GFF676 - Aminoglycoside 9-phosphotransferase (EC 2.7.1.-) => APH(9)-I, at 728,010 to 729,026 GFF676 GFF677 - FIG00931906: hypothetical protein, at 729,043 to 729,972 GFF677 GFF678 - Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7), at 730,047 to 733,400 GFF678 Position (kb) 729 730Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 728.160 kb on + strand, within GFF676at 728.160 kb on + strand, within GFF676at 728.160 kb on + strand, within GFF676at 728.160 kb on + strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.161 kb on - strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.260 kb on + strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.261 kb on - strand, within GFF676at 728.264 kb on + strand, within GFF676at 728.265 kb on - strand, within GFF676at 728.265 kb on - strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.316 kb on + strand, within GFF676at 728.454 kb on + strand, within GFF676at 728.454 kb on + strand, within GFF676at 728.454 kb on + strand, within GFF676at 728.454 kb on + strand, within GFF676at 728.488 kb on - strand, within GFF676at 728.817 kb on + strand, within GFF676at 728.853 kb on + strand, within GFF676at 728.854 kb on - strand, within GFF676at 728.854 kb on - strand, within GFF676at 728.854 kb on - strand, within GFF676at 728.854 kb on - strand, within GFF676at 728.856 kb on + strand, within GFF676at 728.856 kb on + strand, within GFF676at 728.856 kb on + strand, within GFF676at 728.856 kb on + strand, within GFF676at 728.857 kb on - strand, within GFF676at 729.009 kb on + strandat 729.010 kb on - strandat 729.010 kb on - strandat 729.010 kb on - strandat 729.112 kb on + strandat 729.113 kb on - strandat 729.260 kb on + strand, within GFF677at 729.260 kb on + strand, within GFF677at 729.260 kb on + strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.287 kb on + strand, within GFF677at 729.287 kb on + strand, within GFF677at 729.340 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.372 kb on - strand, within GFF677at 729.387 kb on + strand, within GFF677at 729.388 kb on - strand, within GFF677at 729.388 kb on - strand, within GFF677at 729.713 kb on + strand, within GFF677at 729.713 kb on + strand, within GFF677at 729.713 kb on + strand, within GFF677at 729.714 kb on - strand, within GFF677at 729.714 kb on - strand, within GFF677at 729.714 kb on - strand, within GFF677at 729.714 kb on - strand, within GFF677at 729.986 kb on + strandat 730.940 kb on - strand, within GFF678at 730.940 kb on - strand, within GFF678

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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728,160 + GFF676 0.15 -0.4
728,160 + GFF676 0.15 -2.4
728,160 + GFF676 0.15 -0.6
728,160 + GFF676 0.15 -0.6
728,161 - GFF676 0.15 -0.3
728,161 - GFF676 0.15 -1.0
728,161 - GFF676 0.15 -1.9
728,161 - GFF676 0.15 -0.7
728,161 - GFF676 0.15 -1.2
728,161 - GFF676 0.15 -1.6
728,260 + GFF676 0.25 +0.5
728,260 + GFF676 0.25 -3.4
728,260 + GFF676 0.25 +0.5
728,260 + GFF676 0.25 +1.3
728,260 + GFF676 0.25 -0.2
728,260 + GFF676 0.25 -1.1
728,261 - GFF676 0.25 +0.0
728,261 - GFF676 0.25 -1.9
728,261 - GFF676 0.25 -1.5
728,261 - GFF676 0.25 +0.3
728,261 - GFF676 0.25 -1.1
728,264 + GFF676 0.25 -0.3
728,265 - GFF676 0.25 -0.7
728,265 - GFF676 0.25 +3.1
728,316 + GFF676 0.30 -1.4
728,316 + GFF676 0.30 -0.5
728,316 + GFF676 0.30 -0.7
728,316 + GFF676 0.30 +1.2
728,454 + GFF676 0.44 -0.9
728,454 + GFF676 0.44 +0.3
728,454 + GFF676 0.44 -0.8
728,454 + GFF676 0.44 -1.7
728,488 - GFF676 0.47 -0.7
728,817 + GFF676 0.79 +0.3
728,853 + GFF676 0.83 -2.7
728,854 - GFF676 0.83 -2.1
728,854 - GFF676 0.83 -3.4
728,854 - GFF676 0.83 +1.1
728,854 - GFF676 0.83 +0.9
728,856 + GFF676 0.83 -0.9
728,856 + GFF676 0.83 -0.7
728,856 + GFF676 0.83 -2.0
728,856 + GFF676 0.83 +1.0
728,857 - GFF676 0.83 +0.1
729,009 + +1.0
729,010 - -0.6
729,010 - +0.7
729,010 - +0.2
729,112 + -2.8
729,113 - -1.4
729,260 + GFF677 0.23 +0.3
729,260 + GFF677 0.23 -0.7
729,260 + GFF677 0.23 +0.1
729,261 - GFF677 0.23 +0.3
729,261 - GFF677 0.23 +0.2
729,261 - GFF677 0.23 -0.2
729,261 - GFF677 0.23 -2.2
729,261 - GFF677 0.23 -1.0
729,287 + GFF677 0.26 +0.2
729,287 + GFF677 0.26 -0.4
729,340 + GFF677 0.32 -0.6
729,371 + GFF677 0.35 +0.1
729,371 + GFF677 0.35 +0.0
729,371 + GFF677 0.35 -0.2
729,371 + GFF677 0.35 +1.0
729,371 + GFF677 0.35 -1.0
729,371 + GFF677 0.35 +0.6
729,372 - GFF677 0.35 +0.3
729,387 + GFF677 0.37 +0.7
729,388 - GFF677 0.37 -1.4
729,388 - GFF677 0.37 -0.9
729,713 + GFF677 0.72 -0.5
729,713 + GFF677 0.72 +1.6
729,713 + GFF677 0.72 -1.6
729,714 - GFF677 0.72 -1.2
729,714 - GFF677 0.72 -2.8
729,714 - GFF677 0.72 -0.1
729,714 - GFF677 0.72 +1.0
729,986 + +0.5
730,940 - GFF678 0.27 +0.0
730,940 - GFF678 0.27 -1.5

Or see this region's nucleotide sequence