Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6733 and GFF6734 are separated by 220 nucleotides GFF6734 and GFF6735 are separated by 184 nucleotides
GFF6733 - hypothetical protein, at 43,315 to 44,517
GFF6733
GFF6734 - Transcriptional regulator, AraC family, at 44,738 to 45,694
GFF6734
GFF6735 - hypothetical protein, at 45,879 to 47,630
GFF6735
Position (kb) 44
45
46 Strain fitness (log2 ratio) -2
-1
0
1
2 at 44.336 kb on + strand, within GFF6733 at 44.975 kb on + strand, within GFF6734 at 44.976 kb on - strand, within GFF6734 at 45.065 kb on + strand, within GFF6734 at 45.065 kb on + strand, within GFF6734 at 45.066 kb on - strand, within GFF6734 at 45.083 kb on + strand, within GFF6734 at 45.084 kb on - strand, within GFF6734 at 45.242 kb on + strand, within GFF6734 at 45.242 kb on + strand, within GFF6734 at 45.510 kb on - strand, within GFF6734 at 45.510 kb on - strand, within GFF6734 at 45.702 kb on + strand at 45.702 kb on + strand at 45.703 kb on - strand at 45.869 kb on - strand at 45.884 kb on + strand at 45.884 kb on + strand at 45.884 kb on + strand at 45.884 kb on + strand at 45.885 kb on - strand at 45.885 kb on - strand at 45.885 kb on - strand at 45.885 kb on - strand at 45.958 kb on - strand at 46.032 kb on + strand at 46.033 kb on - strand at 46.033 kb on - strand at 46.033 kb on - strand at 46.033 kb on - strand at 46.033 kb on - strand at 46.033 kb on - strand at 46.070 kb on + strand, within GFF6735 at 46.166 kb on + strand, within GFF6735 at 46.325 kb on - strand, within GFF6735 at 46.486 kb on + strand, within GFF6735 at 46.487 kb on - strand, within GFF6735 at 46.487 kb on - strand, within GFF6735 at 46.505 kb on + strand, within GFF6735 at 46.506 kb on - strand, within GFF6735 at 46.506 kb on - strand, within GFF6735 at 46.554 kb on + strand, within GFF6735 at 46.555 kb on - strand, within GFF6735 at 46.555 kb on - strand, within GFF6735 at 46.588 kb on - strand, within GFF6735
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 44,336 + GFF6733 0.85 -1.9 44,975 + GFF6734 0.25 +0.1 44,976 - GFF6734 0.25 -0.8 45,065 + GFF6734 0.34 +0.8 45,065 + GFF6734 0.34 +1.2 45,066 - GFF6734 0.34 +0.4 45,083 + GFF6734 0.36 +1.1 45,084 - GFF6734 0.36 +0.9 45,242 + GFF6734 0.53 -1.0 45,242 + GFF6734 0.53 +1.2 45,510 - GFF6734 0.81 -0.0 45,510 - GFF6734 0.81 +1.1 45,702 + -0.8 45,702 + -1.2 45,703 - -1.4 45,869 - -0.7 45,884 + -2.5 45,884 + -2.5 45,884 + -1.0 45,884 + -1.4 45,885 - -1.1 45,885 - +0.6 45,885 - -1.6 45,885 - -1.3 45,958 - -0.1 46,032 + +0.4 46,033 - +1.3 46,033 - -0.9 46,033 - -1.2 46,033 - -2.1 46,033 - -0.8 46,033 - -1.6 46,070 + GFF6735 0.11 -0.0 46,166 + GFF6735 0.16 -0.6 46,325 - GFF6735 0.25 +1.4 46,486 + GFF6735 0.35 -0.7 46,487 - GFF6735 0.35 -0.0 46,487 - GFF6735 0.35 -1.6 46,505 + GFF6735 0.36 -2.7 46,506 - GFF6735 0.36 -0.2 46,506 - GFF6735 0.36 -2.7 46,554 + GFF6735 0.39 -0.5 46,555 - GFF6735 0.39 +0.4 46,555 - GFF6735 0.39 -1.2 46,588 - GFF6735 0.40 +2.0
Or see this region's nucleotide sequence