Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6717 and GFF6718 are separated by 106 nucleotides GFF6718 and GFF6719 are separated by 7 nucleotides GFF6719 and GFF6720 are separated by 15 nucleotides
GFF6717 - hypothetical protein, at 26,152 to 28,392
GFF6717
GFF6718 - no description, at 28,499 to 28,918
GFF6718
GFF6719 - hypothetical protein, at 28,926 to 29,489
GFF6719
GFF6720 - no description, at 29,505 to 30,554
GFF6720
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 28.015 kb on + strand, within GFF6717 at 28.015 kb on + strand, within GFF6717 at 28.016 kb on - strand, within GFF6717 at 28.047 kb on + strand, within GFF6717 at 28.047 kb on + strand, within GFF6717 at 28.102 kb on + strand, within GFF6717 at 28.103 kb on - strand, within GFF6717 at 28.118 kb on + strand, within GFF6717 at 28.153 kb on + strand, within GFF6717 at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.179 kb on + strand at 28.179 kb on + strand at 28.179 kb on + strand at 28.180 kb on - strand at 28.288 kb on + strand at 28.315 kb on + strand at 28.315 kb on + strand at 28.316 kb on - strand at 28.316 kb on - strand at 28.575 kb on - strand, within GFF6718 at 28.609 kb on + strand, within GFF6718 at 28.839 kb on - strand, within GFF6718 at 29.070 kb on - strand, within GFF6719 at 29.079 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.220 kb on + strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.334 kb on + strand, within GFF6719 at 29.335 kb on - strand, within GFF6719 at 29.335 kb on - strand, within GFF6719 at 29.369 kb on + strand, within GFF6719 at 29.370 kb on - strand, within GFF6719 at 29.700 kb on + strand, within GFF6720 at 29.701 kb on - strand, within GFF6720 at 29.703 kb on + strand, within GFF6720 at 29.919 kb on + strand, within GFF6720 at 29.919 kb on + strand, within GFF6720 at 29.920 kb on - strand, within GFF6720 at 29.920 kb on - strand, within GFF6720 at 29.920 kb on - strand, within GFF6720 at 30.021 kb on + strand, within GFF6720 at 30.021 kb on + strand, within GFF6720 at 30.021 kb on + strand, within GFF6720 at 30.022 kb on - strand, within GFF6720 at 30.175 kb on - strand, within GFF6720 at 30.175 kb on - strand, within GFF6720 at 30.175 kb on - strand, within GFF6720 at 30.175 kb on - strand, within GFF6720 at 30.175 kb on - strand, within GFF6720 at 30.302 kb on - strand, within GFF6720 at 30.302 kb on - strand, within GFF6720
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 28,015 + GFF6717 0.83 -0.8 28,015 + GFF6717 0.83 -0.2 28,016 - GFF6717 0.83 +0.6 28,047 + GFF6717 0.85 -0.3 28,047 + GFF6717 0.85 -2.4 28,102 + GFF6717 0.87 -0.0 28,103 - GFF6717 0.87 -0.7 28,118 + GFF6717 0.88 -0.8 28,153 + GFF6717 0.89 +0.1 28,177 + -0.3 28,177 + +0.1 28,177 + -0.4 28,177 + -1.8 28,177 + -1.6 28,177 + -1.8 28,177 + +1.1 28,178 - -0.7 28,178 - -2.7 28,178 - +0.6 28,178 - -3.1 28,178 - +2.1 28,178 - +0.3 28,178 - -3.7 28,178 - -0.7 28,178 - -0.1 28,178 - +0.4 28,179 + +2.0 28,179 + -2.1 28,179 + +0.4 28,180 - +0.7 28,288 + +0.9 28,315 + +0.3 28,315 + -0.7 28,316 - -2.7 28,316 - -0.6 28,575 - GFF6718 0.18 +1.7 28,609 + GFF6718 0.26 -2.8 28,839 - GFF6718 0.81 +0.8 29,070 - GFF6719 0.26 -0.3 29,079 + GFF6719 0.27 +0.8 29,169 + GFF6719 0.43 -0.2 29,169 + GFF6719 0.43 -1.1 29,169 + GFF6719 0.43 +0.5 29,169 + GFF6719 0.43 +1.8 29,169 + GFF6719 0.43 +2.0 29,170 - GFF6719 0.43 +0.9 29,170 - GFF6719 0.43 -0.7 29,170 - GFF6719 0.43 -1.3 29,170 - GFF6719 0.43 +1.2 29,170 - GFF6719 0.43 -0.2 29,170 - GFF6719 0.43 +0.4 29,170 - GFF6719 0.43 -1.6 29,170 - GFF6719 0.43 -1.3 29,220 + GFF6719 0.52 -0.3 29,221 - GFF6719 0.52 -0.5 29,221 - GFF6719 0.52 -0.3 29,221 - GFF6719 0.52 -0.9 29,221 - GFF6719 0.52 +0.4 29,221 - GFF6719 0.52 +0.3 29,334 + GFF6719 0.72 +0.4 29,335 - GFF6719 0.73 -0.0 29,335 - GFF6719 0.73 -0.3 29,369 + GFF6719 0.79 -1.0 29,370 - GFF6719 0.79 +1.0 29,700 + GFF6720 0.19 -2.4 29,701 - GFF6720 0.19 +0.4 29,703 + GFF6720 0.19 -1.9 29,919 + GFF6720 0.39 +1.4 29,919 + GFF6720 0.39 -2.2 29,920 - GFF6720 0.40 +0.9 29,920 - GFF6720 0.40 -1.0 29,920 - GFF6720 0.40 -2.5 30,021 + GFF6720 0.49 +1.6 30,021 + GFF6720 0.49 -1.3 30,021 + GFF6720 0.49 -1.9 30,022 - GFF6720 0.49 -0.9 30,175 - GFF6720 0.64 -0.3 30,175 - GFF6720 0.64 -0.0 30,175 - GFF6720 0.64 -2.2 30,175 - GFF6720 0.64 -1.2 30,175 - GFF6720 0.64 -0.8 30,302 - GFF6720 0.76 -0.4 30,302 - GFF6720 0.76 -0.6
Or see this region's nucleotide sequence