Strain Fitness in Variovorax sp. SCN45 around GFF670

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF669 and GFF670 are separated by 9 nucleotidesGFF670 and GFF671 are separated by 120 nucleotidesGFF671 and GFF672 are separated by 18 nucleotides GFF669 - BUG/TctC family periplasmic protein, at 721,733 to 722,728 GFF669 GFF670 - putative amidase Psyr_2260, at 722,738 to 724,282 GFF670 GFF671 - hypothetical protein, at 724,403 to 724,825 GFF671 GFF672 - Transcriptional regulator, LysR family, at 724,844 to 725,752 GFF672 Position (kb) 722 723 724 725Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 721.778 kb on + strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.778 kb on + strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.779 kb on - strandat 721.988 kb on + strand, within GFF669at 721.988 kb on + strand, within GFF669at 721.988 kb on + strand, within GFF669at 721.988 kb on + strand, within GFF669at 721.988 kb on + strand, within GFF669at 721.989 kb on - strand, within GFF669at 721.989 kb on - strand, within GFF669at 722.081 kb on + strand, within GFF669at 722.082 kb on - strand, within GFF669at 722.189 kb on + strand, within GFF669at 722.189 kb on + strand, within GFF669at 722.190 kb on - strand, within GFF669at 722.213 kb on + strand, within GFF669at 722.213 kb on + strand, within GFF669at 722.213 kb on + strand, within GFF669at 722.213 kb on + strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.214 kb on - strand, within GFF669at 722.219 kb on + strand, within GFF669at 722.219 kb on + strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.220 kb on - strand, within GFF669at 722.306 kb on + strand, within GFF669at 722.306 kb on + strand, within GFF669at 722.306 kb on + strand, within GFF669at 722.307 kb on - strand, within GFF669at 722.483 kb on + strand, within GFF669at 722.484 kb on - strand, within GFF669at 722.636 kb on + strandat 722.636 kb on + strandat 722.874 kb on + strandat 723.053 kb on + strand, within GFF670at 723.054 kb on - strand, within GFF670at 723.054 kb on - strand, within GFF670at 723.054 kb on - strand, within GFF670at 723.737 kb on + strand, within GFF670at 723.738 kb on - strand, within GFF670at 723.738 kb on - strand, within GFF670at 723.738 kb on - strand, within GFF670at 723.738 kb on - strand, within GFF670at 723.782 kb on + strand, within GFF670at 723.783 kb on - strand, within GFF670at 723.878 kb on + strand, within GFF670at 723.878 kb on + strand, within GFF670at 723.878 kb on + strand, within GFF670at 723.936 kb on - strand, within GFF670at 723.936 kb on - strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.971 kb on + strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.972 kb on - strand, within GFF670at 723.975 kb on - strand, within GFF670at 723.975 kb on - strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.995 kb on + strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 723.996 kb on - strand, within GFF670at 724.269 kb on + strandat 724.326 kb on - strandat 724.330 kb on + strandat 724.331 kb on - strandat 724.331 kb on - strandat 724.331 kb on - strandat 724.332 kb on + strandat 724.343 kb on + strandat 724.344 kb on - strandat 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.547 kb on + strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.548 kb on - strand, within GFF671at 724.568 kb on + strand, within GFF671at 724.568 kb on + strand, within GFF671at 724.569 kb on - strand, within GFF671at 724.569 kb on - strand, within GFF671at 724.748 kb on + strand, within GFF671at 724.749 kb on - strand, within GFF671at 724.802 kb on + strandat 724.802 kb on + strandat 724.802 kb on + strandat 724.803 kb on - strandat 724.803 kb on - strandat 724.803 kb on - strandat 724.803 kb on - strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.827 kb on + strandat 724.828 kb on - strandat 724.828 kb on - strandat 724.947 kb on + strand, within GFF672at 724.947 kb on + strand, within GFF672at 724.947 kb on + strand, within GFF672at 724.948 kb on - strand, within GFF672at 724.948 kb on - strand, within GFF672at 724.948 kb on - strand, within GFF672at 724.948 kb on - strand, within GFF672at 725.106 kb on + strand, within GFF672at 725.178 kb on + strand, within GFF672at 725.187 kb on + strand, within GFF672at 725.187 kb on + strand, within GFF672at 725.188 kb on - strand, within GFF672at 725.188 kb on - strand, within GFF672at 725.241 kb on + strand, within GFF672at 725.241 kb on + strand, within GFF672at 725.241 kb on + strand, within GFF672at 725.241 kb on + strand, within GFF672at 725.242 kb on - strand, within GFF672at 725.242 kb on - strand, within GFF672at 725.242 kb on - strand, within GFF672at 725.242 kb on - strand, within GFF672

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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721,778 + -1.5
721,778 + +0.1
721,778 + -1.0
721,778 + -0.7
721,778 + -2.1
721,778 + -2.0
721,779 - +0.7
721,779 - -0.6
721,779 - +1.3
721,779 - -0.7
721,779 - +2.0
721,779 - -0.8
721,988 + GFF669 0.26 -0.9
721,988 + GFF669 0.26 +1.2
721,988 + GFF669 0.26 -2.0
721,988 + GFF669 0.26 +0.9
721,988 + GFF669 0.26 -2.4
721,989 - GFF669 0.26 -3.4
721,989 - GFF669 0.26 -1.3
722,081 + GFF669 0.35 -1.9
722,082 - GFF669 0.35 -0.8
722,189 + GFF669 0.46 +0.3
722,189 + GFF669 0.46 +0.0
722,190 - GFF669 0.46 +0.0
722,213 + GFF669 0.48 -1.7
722,213 + GFF669 0.48 -2.6
722,213 + GFF669 0.48 +0.8
722,213 + GFF669 0.48 -2.6
722,214 - GFF669 0.48 -3.0
722,214 - GFF669 0.48 +0.7
722,214 - GFF669 0.48 -2.8
722,214 - GFF669 0.48 -0.2
722,214 - GFF669 0.48 -0.4
722,219 + GFF669 0.49 -0.5
722,219 + GFF669 0.49 -1.3
722,220 - GFF669 0.49 -2.0
722,220 - GFF669 0.49 -1.2
722,220 - GFF669 0.49 -1.1
722,220 - GFF669 0.49 -1.1
722,220 - GFF669 0.49 +1.4
722,306 + GFF669 0.58 -3.3
722,306 + GFF669 0.58 -0.4
722,306 + GFF669 0.58 +0.6
722,307 - GFF669 0.58 +1.6
722,483 + GFF669 0.75 -0.7
722,484 - GFF669 0.75 +0.2
722,636 + +1.2
722,636 + -0.5
722,874 + +1.4
723,053 + GFF670 0.20 -2.2
723,054 - GFF670 0.20 -1.6
723,054 - GFF670 0.20 -0.2
723,054 - GFF670 0.20 -2.3
723,737 + GFF670 0.65 -1.1
723,738 - GFF670 0.65 -3.2
723,738 - GFF670 0.65 -0.6
723,738 - GFF670 0.65 -0.2
723,738 - GFF670 0.65 +1.4
723,782 + GFF670 0.68 +2.1
723,783 - GFF670 0.68 -2.1
723,878 + GFF670 0.74 +1.2
723,878 + GFF670 0.74 -1.6
723,878 + GFF670 0.74 -0.3
723,936 - GFF670 0.78 -1.2
723,936 - GFF670 0.78 -0.2
723,971 + GFF670 0.80 -0.9
723,971 + GFF670 0.80 -0.3
723,971 + GFF670 0.80 +0.6
723,971 + GFF670 0.80 -3.8
723,971 + GFF670 0.80 +0.1
723,971 + GFF670 0.80 -0.7
723,972 - GFF670 0.80 -2.3
723,972 - GFF670 0.80 +1.2
723,972 - GFF670 0.80 -2.0
723,972 - GFF670 0.80 +0.0
723,972 - GFF670 0.80 -1.7
723,972 - GFF670 0.80 +1.0
723,972 - GFF670 0.80 -4.5
723,972 - GFF670 0.80 +0.3
723,975 - GFF670 0.80 -1.0
723,975 - GFF670 0.80 -0.5
723,995 + GFF670 0.81 +0.7
723,995 + GFF670 0.81 -1.6
723,995 + GFF670 0.81 -1.2
723,995 + GFF670 0.81 +1.7
723,995 + GFF670 0.81 +0.1
723,995 + GFF670 0.81 -2.4
723,995 + GFF670 0.81 -1.5
723,995 + GFF670 0.81 -1.0
723,995 + GFF670 0.81 +1.3
723,996 - GFF670 0.81 -0.4
723,996 - GFF670 0.81 -3.9
723,996 - GFF670 0.81 -0.4
723,996 - GFF670 0.81 -0.4
723,996 - GFF670 0.81 -0.3
723,996 - GFF670 0.81 -0.4
723,996 - GFF670 0.81 -1.9
723,996 - GFF670 0.81 +1.0
724,269 + -2.0
724,326 - -2.1
724,330 + -0.4
724,331 - +0.6
724,331 - -2.3
724,331 - -0.8
724,332 + +0.6
724,343 + +1.6
724,344 - +1.4
724,547 + GFF671 0.34 -1.5
724,547 + GFF671 0.34 +0.9
724,547 + GFF671 0.34 +0.5
724,547 + GFF671 0.34 +0.1
724,547 + GFF671 0.34 +0.8
724,547 + GFF671 0.34 -1.4
724,548 - GFF671 0.34 -3.3
724,548 - GFF671 0.34 -2.4
724,548 - GFF671 0.34 -0.4
724,548 - GFF671 0.34 -0.3
724,548 - GFF671 0.34 -0.7
724,568 + GFF671 0.39 -0.5
724,568 + GFF671 0.39 +1.2
724,569 - GFF671 0.39 -1.1
724,569 - GFF671 0.39 -2.0
724,748 + GFF671 0.82 -3.1
724,749 - GFF671 0.82 +0.6
724,802 + +2.1
724,802 + -0.4
724,802 + -2.2
724,803 - -0.4
724,803 - -2.4
724,803 - -2.6
724,803 - +0.2
724,827 + -0.4
724,827 + -0.3
724,827 + -0.6
724,827 + +0.6
724,827 + -2.7
724,827 + +0.3
724,828 - -1.6
724,828 - -0.4
724,947 + GFF672 0.11 -0.4
724,947 + GFF672 0.11 +1.0
724,947 + GFF672 0.11 -1.7
724,948 - GFF672 0.11 -2.0
724,948 - GFF672 0.11 -0.7
724,948 - GFF672 0.11 +0.4
724,948 - GFF672 0.11 +0.5
725,106 + GFF672 0.29 -2.1
725,178 + GFF672 0.37 -1.0
725,187 + GFF672 0.38 -2.2
725,187 + GFF672 0.38 -1.5
725,188 - GFF672 0.38 +0.4
725,188 - GFF672 0.38 +0.1
725,241 + GFF672 0.44 -0.8
725,241 + GFF672 0.44 +0.9
725,241 + GFF672 0.44 -1.4
725,241 + GFF672 0.44 +1.6
725,242 - GFF672 0.44 -1.6
725,242 - GFF672 0.44 +1.1
725,242 - GFF672 0.44 +0.3
725,242 - GFF672 0.44 +0.4

Or see this region's nucleotide sequence