Strain Fitness in Variovorax sp. SCN45 around GFF6554

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
50,015	+				+1.9
50,015	+				-2.4
50,047	+				-2.2
50,071	+				-1.7
50,071	+				-0.7
50,071	+				+0.0
50,071	+				+1.2
50,071	+				-0.8
50,071	+				-1.4
50,071	+				-1.8
50,072	-				-0.8
50,072	-				-0.1
50,072	-				-0.7
50,072	-				-2.4
50,138	+				+1.6
50,138	+				+0.2
50,138	+				-0.9
50,138	+				+0.5
50,138	+				-2.4
50,138	+				-0.1
50,138	+				-0.6
50,138	+				-0.2
50,138	+				+0.1
50,138	+				+0.3
50,138	+				+0.3
50,139	-				-2.3
50,139	-				-0.6
50,139	-				-1.0
50,139	-				+0.3
50,160	-				+1.2
50,170	+				-0.5
50,170	+				-1.1
50,171	-				+0.2
50,171	-				-0.1
50,171	-				+1.8
50,865	+		GFF6553	0.86	-0.5
50,865	+		GFF6553	0.86	+2.3
51,124	+		GFF6554	0.29	-1.5
51,125	-		GFF6554	0.29	-2.5
51,167	-		GFF6554	0.37	-0.4
51,286	+		GFF6554	0.60	-1.1
51,286	+		GFF6554	0.60	-1.0
51,531	+				-1.7
51,866	+		GFF6555	0.89	+1.2
51,992	-				-1.0
51,994	+				+0.9
51,994	+				-0.1
51,994	+				+0.6
51,994	+				-1.5
51,994	+				-1.7
51,994	+				+0.8
51,994	+				-1.5
51,994	+				-0.3
51,994	+				-1.7
51,994	+				-0.8
51,995	-				-0.3
51,995	-				+1.3
51,995	-				-0.3
51,995	-				+1.6
51,995	-				-0.7
52,016	+				-1.3
52,016	+				-0.9
52,016	+				+0.5
52,017	-				+1.4
52,017	-				-0.2
52,239	+		GFF6556	0.64	-2.6
52,240	-		GFF6556	0.64	+0.7
52,240	-		GFF6556	0.64	-2.2
52,277	-		GFF6556	0.75	-1.4
52,284	+		GFF6556	0.77	-2.4
52,285	-		GFF6556	0.77	-1.1
52,285	-		GFF6556	0.77	-0.9
52,420	+				-0.6
52,420	+				+1.9
52,420	+				+2.2