Strain Fitness in Variovorax sp. SCN45 around GFF644

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF642 and GFF643 are separated by 28 nucleotidesGFF643 and GFF644 are separated by 95 nucleotidesGFF644 and GFF645 are separated by 15 nucleotidesGFF645 and GFF646 are separated by 11 nucleotides GFF642 - Membrane protease family protein BA0301, at 693,224 to 694,120 GFF642 GFF643 - no description, at 694,149 to 694,358 GFF643 GFF644 - ABC transporter, substrate-binding protein (cluster 6, sulfate/molybdate/tungstate/phosphate), at 694,454 to 695,275 GFF644 GFF645 - hypothetical protein, at 695,291 to 696,193 GFF645 GFF646 - no description, at 696,205 to 696,552 GFF646 Position (kb) 694 695 696Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 693.665 kb on + strand, within GFF642at 693.665 kb on + strand, within GFF642at 693.665 kb on + strand, within GFF642at 693.665 kb on + strand, within GFF642at 693.665 kb on + strand, within GFF642at 693.666 kb on - strand, within GFF642at 693.666 kb on - strand, within GFF642at 693.666 kb on - strand, within GFF642at 693.666 kb on - strand, within GFF642at 693.666 kb on - strand, within GFF642at 693.666 kb on - strand, within GFF642at 693.722 kb on + strand, within GFF642at 693.723 kb on - strand, within GFF642at 693.723 kb on - strand, within GFF642at 693.723 kb on - strand, within GFF642at 693.723 kb on - strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.870 kb on + strand, within GFF642at 693.871 kb on - strand, within GFF642at 693.871 kb on - strand, within GFF642at 693.871 kb on - strand, within GFF642at 693.871 kb on - strand, within GFF642at 693.871 kb on - strand, within GFF642at 693.871 kb on - strand, within GFF642at 693.875 kb on + strand, within GFF642at 693.875 kb on + strand, within GFF642at 693.875 kb on + strand, within GFF642at 693.875 kb on + strand, within GFF642at 693.875 kb on + strand, within GFF642at 693.876 kb on - strand, within GFF642at 693.876 kb on - strand, within GFF642at 693.876 kb on - strand, within GFF642at 693.876 kb on - strand, within GFF642at 693.876 kb on - strand, within GFF642at 693.876 kb on - strand, within GFF642at 694.105 kb on + strandat 694.105 kb on + strandat 694.106 kb on - strandat 694.106 kb on - strandat 694.112 kb on + strandat 694.112 kb on + strandat 694.112 kb on + strandat 694.112 kb on + strandat 694.113 kb on - strandat 694.113 kb on - strandat 694.113 kb on - strandat 694.113 kb on - strandat 694.113 kb on - strandat 694.113 kb on - strandat 694.173 kb on + strand, within GFF643at 694.173 kb on + strand, within GFF643at 694.401 kb on + strandat 694.401 kb on + strandat 694.401 kb on + strandat 694.402 kb on - strandat 694.402 kb on - strandat 694.402 kb on - strandat 694.442 kb on + strandat 694.610 kb on + strand, within GFF644at 694.610 kb on + strand, within GFF644at 694.667 kb on + strand, within GFF644at 694.667 kb on + strand, within GFF644at 694.668 kb on - strand, within GFF644at 694.668 kb on - strand, within GFF644at 694.668 kb on - strand, within GFF644at 694.919 kb on + strand, within GFF644at 694.920 kb on - strand, within GFF644at 694.943 kb on + strand, within GFF644at 694.943 kb on + strand, within GFF644at 694.943 kb on + strand, within GFF644at 694.943 kb on + strand, within GFF644at 694.943 kb on + strand, within GFF644at 694.944 kb on - strand, within GFF644at 694.944 kb on - strand, within GFF644at 694.944 kb on - strand, within GFF644at 694.944 kb on - strand, within GFF644at 694.946 kb on + strand, within GFF644at 694.946 kb on + strand, within GFF644at 694.946 kb on + strand, within GFF644at 694.946 kb on + strand, within GFF644at 694.946 kb on - strand, within GFF644at 694.947 kb on - strand, within GFF644at 694.947 kb on - strand, within GFF644at 694.947 kb on - strand, within GFF644at 694.947 kb on - strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.105 kb on + strand, within GFF644at 695.207 kb on + strandat 695.239 kb on + strandat 695.293 kb on - strandat 695.379 kb on + strandat 695.448 kb on + strand, within GFF645at 695.448 kb on + strand, within GFF645at 695.449 kb on - strand, within GFF645at 695.449 kb on - strand, within GFF645at 695.449 kb on - strand, within GFF645at 695.763 kb on + strand, within GFF645at 695.922 kb on + strand, within GFF645at 695.922 kb on + strand, within GFF645at 695.922 kb on + strand, within GFF645at 695.923 kb on - strand, within GFF645at 695.923 kb on - strand, within GFF645at 695.923 kb on - strand, within GFF645at 696.015 kb on + strand, within GFF645at 696.015 kb on + strand, within GFF645at 696.051 kb on + strand, within GFF645at 696.067 kb on - strand, within GFF645at 696.067 kb on - strand, within GFF645at 696.067 kb on - strand, within GFF645at 696.067 kb on - strand, within GFF645at 696.111 kb on + strandat 696.111 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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693,665 + GFF642 0.49 -0.4
693,665 + GFF642 0.49 -1.1
693,665 + GFF642 0.49 -0.7
693,665 + GFF642 0.49 +0.1
693,665 + GFF642 0.49 -0.2
693,666 - GFF642 0.49 -1.2
693,666 - GFF642 0.49 +1.6
693,666 - GFF642 0.49 +0.9
693,666 - GFF642 0.49 +3.3
693,666 - GFF642 0.49 -1.0
693,666 - GFF642 0.49 +1.1
693,722 + GFF642 0.56 -1.2
693,723 - GFF642 0.56 -1.2
693,723 - GFF642 0.56 -2.2
693,723 - GFF642 0.56 +0.4
693,723 - GFF642 0.56 +0.7
693,870 + GFF642 0.72 +0.8
693,870 + GFF642 0.72 +1.6
693,870 + GFF642 0.72 +0.1
693,870 + GFF642 0.72 +0.7
693,870 + GFF642 0.72 +0.5
693,870 + GFF642 0.72 -1.0
693,870 + GFF642 0.72 -0.3
693,870 + GFF642 0.72 +2.6
693,870 + GFF642 0.72 -1.2
693,871 - GFF642 0.72 +1.0
693,871 - GFF642 0.72 -0.4
693,871 - GFF642 0.72 -0.7
693,871 - GFF642 0.72 -0.4
693,871 - GFF642 0.72 -1.5
693,871 - GFF642 0.72 +2.3
693,875 + GFF642 0.73 -1.6
693,875 + GFF642 0.73 -0.1
693,875 + GFF642 0.73 +0.0
693,875 + GFF642 0.73 +1.0
693,875 + GFF642 0.73 -0.4
693,876 - GFF642 0.73 -1.6
693,876 - GFF642 0.73 +0.9
693,876 - GFF642 0.73 -0.0
693,876 - GFF642 0.73 -2.6
693,876 - GFF642 0.73 +0.6
693,876 - GFF642 0.73 +0.0
694,105 + +0.3
694,105 + -0.5
694,106 - -1.3
694,106 - +1.0
694,112 + +1.4
694,112 + -0.7
694,112 + +0.2
694,112 + +1.2
694,113 - -0.4
694,113 - -1.9
694,113 - +2.6
694,113 - -1.2
694,113 - -3.2
694,113 - +0.8
694,173 + GFF643 0.11 -0.4
694,173 + GFF643 0.11 -0.0
694,401 + -2.0
694,401 + -0.3
694,401 + +0.0
694,402 - +1.0
694,402 - -0.3
694,402 - -0.1
694,442 + -2.2
694,610 + GFF644 0.19 -0.8
694,610 + GFF644 0.19 -0.6
694,667 + GFF644 0.26 +1.4
694,667 + GFF644 0.26 -1.2
694,668 - GFF644 0.26 -1.4
694,668 - GFF644 0.26 -0.9
694,668 - GFF644 0.26 +0.1
694,919 + GFF644 0.57 -1.2
694,920 - GFF644 0.57 +0.6
694,943 + GFF644 0.59 +1.5
694,943 + GFF644 0.59 +0.6
694,943 + GFF644 0.59 -1.8
694,943 + GFF644 0.59 +2.0
694,943 + GFF644 0.59 +1.5
694,944 - GFF644 0.60 -0.3
694,944 - GFF644 0.60 -0.5
694,944 - GFF644 0.60 +1.2
694,944 - GFF644 0.60 +0.1
694,946 + GFF644 0.60 -2.4
694,946 + GFF644 0.60 +1.7
694,946 + GFF644 0.60 +1.0
694,946 + GFF644 0.60 +2.0
694,946 - GFF644 0.60 +0.3
694,947 - GFF644 0.60 -1.5
694,947 - GFF644 0.60 -1.9
694,947 - GFF644 0.60 -1.2
694,947 - GFF644 0.60 +1.2
695,105 + GFF644 0.79 +2.2
695,105 + GFF644 0.79 +1.1
695,105 + GFF644 0.79 -1.1
695,105 + GFF644 0.79 -0.4
695,105 + GFF644 0.79 +0.4
695,105 + GFF644 0.79 +0.2
695,105 + GFF644 0.79 +0.4
695,105 + GFF644 0.79 -0.2
695,207 + -0.1
695,239 + -3.1
695,293 - -2.8
695,379 + +1.0
695,448 + GFF645 0.17 -0.8
695,448 + GFF645 0.17 -1.9
695,449 - GFF645 0.17 -1.9
695,449 - GFF645 0.17 -0.7
695,449 - GFF645 0.17 -2.9
695,763 + GFF645 0.52 -1.0
695,922 + GFF645 0.70 +0.7
695,922 + GFF645 0.70 -1.1
695,922 + GFF645 0.70 -1.5
695,923 - GFF645 0.70 +1.2
695,923 - GFF645 0.70 -1.1
695,923 - GFF645 0.70 +1.0
696,015 + GFF645 0.80 -0.2
696,015 + GFF645 0.80 -1.0
696,051 + GFF645 0.84 -3.0
696,067 - GFF645 0.86 +0.9
696,067 - GFF645 0.86 +0.6
696,067 - GFF645 0.86 +0.6
696,067 - GFF645 0.86 +0.1
696,111 + +0.2
696,111 + +0.0

Or see this region's nucleotide sequence