Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6375 and GFF6376 overlap by 4 nucleotides GFF6376 and GFF6377 overlap by 23 nucleotides GFF6377 and GFF6378 are separated by 52 nucleotides GFF6378 and GFF6379 are separated by 161 nucleotides
GFF6375 - Uncharacterized aldehyde oxidase, molybdopterin-binding subunit, at 44,874 to 48,632
GFF6375
GFF6376 - Uncharacterized aldehyde oxidase, 2Fe-2S subunit, at 48,629 to 49,129
GFF6376
GFF6377 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 49,107 to 50,267
GFF6377
GFF6378 - Nicotinamidase (EC 3.5.1.19), at 50,320 to 51,045
GFF6378
GFF6379 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 51,207 to 51,941
GFF6379
Position (kb) 49
50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 48.133 kb on + strand, within GFF6375 at 48.133 kb on + strand, within GFF6375 at 48.134 kb on - strand, within GFF6375 at 49.136 kb on - strand at 49.136 kb on - strand at 49.136 kb on - strand at 49.136 kb on - strand at 49.136 kb on - strand at 49.184 kb on - strand at 49.306 kb on + strand, within GFF6377 at 49.306 kb on + strand, within GFF6377 at 49.307 kb on - strand, within GFF6377 at 49.307 kb on - strand, within GFF6377 at 49.325 kb on - strand, within GFF6377 at 49.366 kb on + strand, within GFF6377 at 49.366 kb on + strand, within GFF6377 at 49.496 kb on - strand, within GFF6377 at 49.496 kb on - strand, within GFF6377 at 49.545 kb on + strand, within GFF6377 at 49.546 kb on - strand, within GFF6377 at 49.669 kb on + strand, within GFF6377 at 49.670 kb on - strand, within GFF6377 at 49.729 kb on + strand, within GFF6377 at 50.006 kb on - strand, within GFF6377 at 50.077 kb on + strand, within GFF6377 at 50.078 kb on - strand, within GFF6377 at 50.290 kb on + strand at 50.290 kb on + strand at 50.291 kb on - strand at 50.595 kb on - strand, within GFF6378 at 50.724 kb on - strand, within GFF6378 at 51.060 kb on + strand at 51.208 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 48,133 + GFF6375 0.87 -0.5 48,133 + GFF6375 0.87 +1.3 48,134 - GFF6375 0.87 -3.2 49,136 - -1.8 49,136 - -0.1 49,136 - -1.1 49,136 - -1.2 49,136 - -2.1 49,184 - -0.9 49,306 + GFF6377 0.17 -1.1 49,306 + GFF6377 0.17 +2.0 49,307 - GFF6377 0.17 -2.2 49,307 - GFF6377 0.17 -3.0 49,325 - GFF6377 0.19 -1.4 49,366 + GFF6377 0.22 -1.6 49,366 + GFF6377 0.22 -0.9 49,496 - GFF6377 0.34 -1.1 49,496 - GFF6377 0.34 +1.0 49,545 + GFF6377 0.38 -2.2 49,546 - GFF6377 0.38 -1.5 49,669 + GFF6377 0.48 -0.2 49,670 - GFF6377 0.48 -1.1 49,729 + GFF6377 0.54 +0.4 50,006 - GFF6377 0.77 -1.1 50,077 + GFF6377 0.84 +2.1 50,078 - GFF6377 0.84 -2.1 50,290 + -1.0 50,290 + +0.7 50,291 - +2.8 50,595 - GFF6378 0.38 +0.1 50,724 - GFF6378 0.56 -1.2 51,060 + -1.3 51,208 + -0.0
Or see this region's nucleotide sequence