Strain Fitness in Variovorax sp. SCN45 around GFF6191

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6190 and GFF6191 are separated by 9 nucleotidesGFF6191 and GFF6192 are separated by 24 nucleotides GFF6190 - 3-hydroxyisobutyrate dehydrogenase family protein, at 95,786 to 96,676 GFF6190 GFF6191 - Aldehyde dehydrogenase (EC 1.2.1.3), at 96,686 to 98,134 GFF6191 GFF6192 - Amidase family protein Atu4441, at 98,159 to 99,562 GFF6192 Position (kb) 96 97 98 99Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 95.916 kb on + strand, within GFF6190at 95.916 kb on + strand, within GFF6190at 95.916 kb on + strand, within GFF6190at 95.916 kb on + strand, within GFF6190at 95.916 kb on + strand, within GFF6190at 95.916 kb on + strand, within GFF6190at 95.916 kb on + strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.917 kb on - strand, within GFF6190at 95.919 kb on + strand, within GFF6190at 95.919 kb on + strand, within GFF6190at 95.920 kb on - strand, within GFF6190at 95.920 kb on - strand, within GFF6190at 95.920 kb on - strand, within GFF6190at 96.794 kb on + strandat 96.794 kb on + strandat 96.794 kb on + strandat 96.794 kb on + strandat 96.795 kb on - strandat 96.795 kb on - strandat 96.795 kb on - strandat 96.795 kb on - strandat 96.795 kb on - strandat 96.813 kb on + strandat 96.813 kb on + strandat 96.813 kb on + strandat 96.814 kb on - strandat 96.887 kb on + strand, within GFF6191at 96.888 kb on - strand, within GFF6191at 97.041 kb on + strand, within GFF6191at 97.041 kb on + strand, within GFF6191at 97.041 kb on + strand, within GFF6191at 97.042 kb on - strand, within GFF6191at 97.042 kb on - strand, within GFF6191at 97.042 kb on - strand, within GFF6191at 97.042 kb on - strand, within GFF6191at 97.044 kb on + strand, within GFF6191at 97.045 kb on - strand, within GFF6191at 97.242 kb on + strand, within GFF6191at 97.675 kb on - strand, within GFF6191at 97.675 kb on - strand, within GFF6191at 97.735 kb on - strand, within GFF6191at 97.735 kb on - strand, within GFF6191at 97.746 kb on + strand, within GFF6191at 97.746 kb on + strand, within GFF6191at 97.746 kb on + strand, within GFF6191at 97.747 kb on - strand, within GFF6191at 97.789 kb on - strand, within GFF6191at 97.789 kb on - strand, within GFF6191at 97.789 kb on - strand, within GFF6191at 97.791 kb on + strand, within GFF6191at 97.791 kb on + strand, within GFF6191at 97.791 kb on + strand, within GFF6191at 97.791 kb on + strand, within GFF6191at 97.791 kb on + strand, within GFF6191at 97.791 kb on + strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.792 kb on - strand, within GFF6191at 97.801 kb on - strand, within GFF6191at 97.801 kb on - strand, within GFF6191at 98.289 kb on + strandat 98.331 kb on + strand, within GFF6192at 98.331 kb on + strand, within GFF6192at 98.332 kb on - strand, within GFF6192at 98.332 kb on - strand, within GFF6192at 98.332 kb on - strand, within GFF6192at 98.332 kb on - strand, within GFF6192at 98.332 kb on - strand, within GFF6192at 98.493 kb on + strand, within GFF6192at 98.553 kb on + strand, within GFF6192at 98.554 kb on - strand, within GFF6192at 98.554 kb on - strand, within GFF6192at 98.554 kb on - strand, within GFF6192at 98.554 kb on - strand, within GFF6192at 98.943 kb on + strand, within GFF6192at 98.944 kb on - strand, within GFF6192at 98.944 kb on - strand, within GFF6192at 98.944 kb on - strand, within GFF6192at 98.989 kb on - strand, within GFF6192at 98.989 kb on - strand, within GFF6192at 98.989 kb on - strand, within GFF6192

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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95,916 + GFF6190 0.15 -3.0
95,916 + GFF6190 0.15 -2.6
95,916 + GFF6190 0.15 -0.0
95,916 + GFF6190 0.15 -1.9
95,916 + GFF6190 0.15 -2.0
95,916 + GFF6190 0.15 -4.2
95,916 + GFF6190 0.15 -2.3
95,917 - GFF6190 0.15 -2.6
95,917 - GFF6190 0.15 -3.5
95,917 - GFF6190 0.15 -0.6
95,917 - GFF6190 0.15 -3.6
95,917 - GFF6190 0.15 +1.1
95,917 - GFF6190 0.15 -0.5
95,917 - GFF6190 0.15 -1.7
95,917 - GFF6190 0.15 -2.2
95,919 + GFF6190 0.15 -0.3
95,919 + GFF6190 0.15 -2.6
95,920 - GFF6190 0.15 -0.9
95,920 - GFF6190 0.15 -4.0
95,920 - GFF6190 0.15 -4.3
96,794 + -1.8
96,794 + -4.7
96,794 + -2.3
96,794 + -2.1
96,795 - -2.4
96,795 - -0.4
96,795 - +0.1
96,795 - -1.9
96,795 - +0.4
96,813 + -0.6
96,813 + +0.5
96,813 + -0.7
96,814 - -3.6
96,887 + GFF6191 0.14 -3.6
96,888 - GFF6191 0.14 -2.1
97,041 + GFF6191 0.24 -2.7
97,041 + GFF6191 0.24 +1.1
97,041 + GFF6191 0.24 -0.0
97,042 - GFF6191 0.25 +0.3
97,042 - GFF6191 0.25 -3.0
97,042 - GFF6191 0.25 -2.4
97,042 - GFF6191 0.25 -3.0
97,044 + GFF6191 0.25 -4.7
97,045 - GFF6191 0.25 -2.5
97,242 + GFF6191 0.38 -1.5
97,675 - GFF6191 0.68 -0.5
97,675 - GFF6191 0.68 -0.9
97,735 - GFF6191 0.72 +0.1
97,735 - GFF6191 0.72 -1.8
97,746 + GFF6191 0.73 -2.6
97,746 + GFF6191 0.73 -2.7
97,746 + GFF6191 0.73 -2.8
97,747 - GFF6191 0.73 -2.3
97,789 - GFF6191 0.76 -1.7
97,789 - GFF6191 0.76 -0.3
97,789 - GFF6191 0.76 -0.5
97,791 + GFF6191 0.76 -2.2
97,791 + GFF6191 0.76 -0.7
97,791 + GFF6191 0.76 -1.2
97,791 + GFF6191 0.76 -1.5
97,791 + GFF6191 0.76 -1.5
97,791 + GFF6191 0.76 -0.9
97,792 - GFF6191 0.76 +1.1
97,792 - GFF6191 0.76 +0.5
97,792 - GFF6191 0.76 -0.1
97,792 - GFF6191 0.76 -3.2
97,792 - GFF6191 0.76 -0.9
97,792 - GFF6191 0.76 -1.2
97,792 - GFF6191 0.76 -1.7
97,792 - GFF6191 0.76 -3.7
97,792 - GFF6191 0.76 -1.2
97,792 - GFF6191 0.76 -0.9
97,792 - GFF6191 0.76 -2.7
97,792 - GFF6191 0.76 +0.1
97,801 - GFF6191 0.77 -0.5
97,801 - GFF6191 0.77 -0.7
98,289 + -2.6
98,331 + GFF6192 0.12 -1.7
98,331 + GFF6192 0.12 -2.8
98,332 - GFF6192 0.12 -1.8
98,332 - GFF6192 0.12 -1.4
98,332 - GFF6192 0.12 -0.8
98,332 - GFF6192 0.12 +1.1
98,332 - GFF6192 0.12 -2.3
98,493 + GFF6192 0.24 -1.3
98,553 + GFF6192 0.28 -1.3
98,554 - GFF6192 0.28 -1.8
98,554 - GFF6192 0.28 -2.9
98,554 - GFF6192 0.28 -0.7
98,554 - GFF6192 0.28 -1.8
98,943 + GFF6192 0.56 -2.6
98,944 - GFF6192 0.56 -1.1
98,944 - GFF6192 0.56 -0.9
98,944 - GFF6192 0.56 -1.9
98,989 - GFF6192 0.59 -2.9
98,989 - GFF6192 0.59 -0.6
98,989 - GFF6192 0.59 -2.1

Or see this region's nucleotide sequence