Strain Fitness in Variovorax sp. SCN45 around GFF6072

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6071 and GFF6072 are separated by 96 nucleotidesGFF6072 and GFF6073 are separated by 66 nucleotides GFF6071 - Putative exported protein clustered with Gamma-glutamyltranspeptidase, at 133,195 to 134,166 GFF6071 GFF6072 - Transcriptional regulator, LysR family, at 134,263 to 135,189 GFF6072 GFF6073 - Tripartite tricarboxylate transporter TctA family, at 135,256 to 136,767 GFF6073 Position (kb) 134 135 136Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 133.406 kb on + strand, within GFF6071at 133.406 kb on + strand, within GFF6071at 133.406 kb on + strand, within GFF6071at 133.407 kb on - strand, within GFF6071at 133.407 kb on - strand, within GFF6071at 133.407 kb on - strand, within GFF6071at 133.407 kb on - strand, within GFF6071at 133.407 kb on - strand, within GFF6071at 133.616 kb on + strand, within GFF6071at 133.703 kb on + strand, within GFF6071at 133.703 kb on + strand, within GFF6071at 133.703 kb on + strand, within GFF6071at 133.703 kb on + strand, within GFF6071at 133.703 kb on + strand, within GFF6071at 133.703 kb on + strand, within GFF6071at 133.704 kb on - strand, within GFF6071at 133.704 kb on - strand, within GFF6071at 133.904 kb on + strand, within GFF6071at 133.904 kb on + strand, within GFF6071at 133.904 kb on + strand, within GFF6071at 133.905 kb on - strand, within GFF6071at 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.205 kb on - strandat 134.250 kb on - strandat 134.250 kb on - strandat 134.262 kb on + strandat 134.929 kb on + strand, within GFF6072at 134.930 kb on - strand, within GFF6072at 134.930 kb on - strand, within GFF6072at 134.930 kb on - strand, within GFF6072at 134.930 kb on - strand, within GFF6072at 135.016 kb on + strand, within GFF6072at 135.017 kb on - strand, within GFF6072at 135.017 kb on - strand, within GFF6072at 135.017 kb on - strand, within GFF6072at 135.017 kb on - strand, within GFF6072at 135.095 kb on + strand, within GFF6072at 135.095 kb on + strand, within GFF6072at 135.096 kb on - strand, within GFF6072at 135.488 kb on + strand, within GFF6073at 135.488 kb on + strand, within GFF6073at 135.488 kb on + strand, within GFF6073at 135.489 kb on - strand, within GFF6073at 135.489 kb on - strand, within GFF6073at 135.489 kb on - strand, within GFF6073at 135.489 kb on - strand, within GFF6073at 135.489 kb on - strand, within GFF6073at 135.489 kb on - strand, within GFF6073at 135.548 kb on + strand, within GFF6073at 135.590 kb on + strand, within GFF6073at 135.590 kb on + strand, within GFF6073at 135.590 kb on + strand, within GFF6073at 135.590 kb on + strand, within GFF6073at 135.590 kb on + strand, within GFF6073at 135.590 kb on + strand, within GFF6073at 135.590 kb on + strand, within GFF6073at 135.591 kb on - strand, within GFF6073at 135.591 kb on - strand, within GFF6073at 135.591 kb on - strand, within GFF6073at 135.596 kb on + strand, within GFF6073at 135.596 kb on + strand, within GFF6073at 135.596 kb on + strand, within GFF6073at 135.596 kb on + strand, within GFF6073at 135.596 kb on + strand, within GFF6073at 135.597 kb on - strand, within GFF6073at 135.597 kb on - strand, within GFF6073at 135.929 kb on + strand, within GFF6073at 135.929 kb on + strand, within GFF6073at 135.929 kb on + strand, within GFF6073at 135.930 kb on - strand, within GFF6073at 135.930 kb on - strand, within GFF6073at 135.930 kb on - strand, within GFF6073

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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133,406 + GFF6071 0.22 -0.3
133,406 + GFF6071 0.22 -2.5
133,406 + GFF6071 0.22 -2.5
133,407 - GFF6071 0.22 -1.1
133,407 - GFF6071 0.22 -0.0
133,407 - GFF6071 0.22 -2.0
133,407 - GFF6071 0.22 -0.6
133,407 - GFF6071 0.22 -0.6
133,616 + GFF6071 0.43 +1.1
133,703 + GFF6071 0.52 -2.1
133,703 + GFF6071 0.52 +0.4
133,703 + GFF6071 0.52 -0.2
133,703 + GFF6071 0.52 +1.3
133,703 + GFF6071 0.52 -1.8
133,703 + GFF6071 0.52 +2.1
133,704 - GFF6071 0.52 -3.9
133,704 - GFF6071 0.52 +0.6
133,904 + GFF6071 0.73 +0.0
133,904 + GFF6071 0.73 -1.5
133,904 + GFF6071 0.73 +1.9
133,905 - GFF6071 0.73 -1.1
134,204 + +2.8
134,204 + -0.9
134,204 + -2.1
134,204 + -0.2
134,204 + -1.9
134,204 + +3.2
134,204 + -0.1
134,204 + -0.5
134,204 + +0.5
134,204 + -2.6
134,204 + +0.1
134,204 + +2.1
134,204 + +0.1
134,204 + +0.9
134,204 + -2.4
134,204 + -1.4
134,204 + -0.2
134,205 - -0.5
134,205 - -0.9
134,205 - +1.0
134,205 - +0.9
134,205 - -0.1
134,205 - -0.2
134,205 - +0.1
134,205 - +2.1
134,205 - -2.5
134,205 - +1.3
134,205 - -1.4
134,205 - +1.1
134,205 - +0.5
134,205 - +1.7
134,205 - -1.9
134,205 - -2.0
134,205 - -1.4
134,205 - -1.2
134,205 - -3.3
134,205 - +0.9
134,205 - +0.4
134,250 - -1.4
134,250 - -0.7
134,262 + +0.1
134,929 + GFF6072 0.72 -1.1
134,930 - GFF6072 0.72 +1.5
134,930 - GFF6072 0.72 -1.6
134,930 - GFF6072 0.72 -0.1
134,930 - GFF6072 0.72 -0.3
135,016 + GFF6072 0.81 +0.1
135,017 - GFF6072 0.81 +2.1
135,017 - GFF6072 0.81 -0.2
135,017 - GFF6072 0.81 -2.1
135,017 - GFF6072 0.81 +1.3
135,095 + GFF6072 0.90 +1.5
135,095 + GFF6072 0.90 -0.7
135,096 - GFF6072 0.90 +3.6
135,488 + GFF6073 0.15 +0.7
135,488 + GFF6073 0.15 +1.6
135,488 + GFF6073 0.15 +1.7
135,489 - GFF6073 0.15 +0.2
135,489 - GFF6073 0.15 -0.2
135,489 - GFF6073 0.15 -2.0
135,489 - GFF6073 0.15 -0.5
135,489 - GFF6073 0.15 -1.6
135,489 - GFF6073 0.15 -2.7
135,548 + GFF6073 0.19 +2.3
135,590 + GFF6073 0.22 +0.1
135,590 + GFF6073 0.22 +2.6
135,590 + GFF6073 0.22 -1.8
135,590 + GFF6073 0.22 -1.2
135,590 + GFF6073 0.22 +1.9
135,590 + GFF6073 0.22 -1.3
135,590 + GFF6073 0.22 -3.6
135,591 - GFF6073 0.22 +2.7
135,591 - GFF6073 0.22 +0.2
135,591 - GFF6073 0.22 +0.1
135,596 + GFF6073 0.22 -1.1
135,596 + GFF6073 0.22 -2.1
135,596 + GFF6073 0.22 +1.3
135,596 + GFF6073 0.22 -2.2
135,596 + GFF6073 0.22 -1.1
135,597 - GFF6073 0.23 +0.7
135,597 - GFF6073 0.23 +0.1
135,929 + GFF6073 0.45 +2.1
135,929 + GFF6073 0.45 +0.2
135,929 + GFF6073 0.45 +1.5
135,930 - GFF6073 0.45 -0.1
135,930 - GFF6073 0.45 -1.1
135,930 - GFF6073 0.45 +0.2

Or see this region's nucleotide sequence