Strain Fitness in Variovorax sp. SCN45 around GFF5924

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
138,435	+		GFF5922	0.89	+0.3
138,435	+		GFF5922	0.89	-0.3
138,435	+		GFF5922	0.89	-0.6
138,477	-				-1.1
138,602	+				-0.6
138,604	+				-0.8
138,604	+				+1.4
138,605	-				+1.3
138,605	-				-1.4
138,605	-				-0.6
138,605	-				+1.0
138,664	-				+0.3
138,698	+				-0.2
138,698	+				-1.5
138,705	+				-2.0
138,705	+				-0.6
138,706	-				-0.3
138,706	-				+2.9
138,706	-				-2.1
138,706	-				+0.3
139,041	+		GFF5924	0.14	+1.2
139,042	-		GFF5924	0.14	-1.7
139,042	-		GFF5924	0.14	-0.7
139,042	-		GFF5924	0.14	-0.7
140,172	+				-2.2
140,172	+				-0.6
140,173	-				-0.5
140,173	-				+0.8
140,257	-		GFF5925	0.10	+0.3
140,257	-		GFF5925	0.10	-1.3
140,257	-		GFF5925	0.10	+3.4
140,319	+		GFF5925	0.17	+2.3
140,319	+		GFF5925	0.17	-2.8
140,320	-		GFF5925	0.18	+0.8
140,343	+		GFF5925	0.20	+0.2
140,343	+		GFF5925	0.20	-1.4
140,343	+		GFF5925	0.20	-1.2
140,344	-		GFF5925	0.20	+1.6
140,344	-		GFF5925	0.20	+1.9
140,464	-		GFF5925	0.34	-1.2
140,547	+		GFF5925	0.43	+0.3
140,580	+		GFF5925	0.47	-0.1
140,580	+		GFF5925	0.47	-0.6
140,580	+		GFF5925	0.47	-1.1
140,799	+		GFF5925	0.72	+2.3
140,800	-		GFF5925	0.72	-0.3
140,800	-		GFF5925	0.72	+0.1
140,916	+		GFF5925	0.85	-3.5
140,917	-		GFF5925	0.85	-0.6
140,983	-				-0.3