Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5817 and GFF5818 overlap by 4 nucleotides GFF5818 and GFF5819 are separated by 242 nucleotides GFF5819 and GFF5820 are separated by 246 nucleotides
GFF5817 - Two-component system sensor histidine kinase, at 196,372 to 197,745
GFF5817
GFF5818 - Two-component transcriptional response regulator, NarL/FixJ family, at 197,742 to 198,377
GFF5818
GFF5819 - no description, at 198,620 to 198,874
GFF5819
GFF5820 - hypothetical protein, at 199,121 to 199,843
GFF5820
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.756 kb on + strand, within GFF5817 at 196.757 kb on - strand, within GFF5817 at 196.804 kb on + strand, within GFF5817 at 196.805 kb on - strand, within GFF5817 at 197.585 kb on + strand, within GFF5817 at 197.585 kb on + strand, within GFF5817 at 197.586 kb on - strand, within GFF5817 at 198.003 kb on + strand, within GFF5818 at 198.003 kb on + strand, within GFF5818 at 198.004 kb on - strand, within GFF5818 at 198.018 kb on + strand, within GFF5818 at 198.019 kb on - strand, within GFF5818 at 198.019 kb on - strand, within GFF5818 at 198.019 kb on - strand, within GFF5818 at 198.339 kb on + strand at 198.468 kb on + strand at 198.469 kb on - strand at 198.501 kb on + strand at 198.596 kb on + strand at 198.597 kb on - strand at 198.597 kb on - strand at 198.635 kb on - strand at 198.683 kb on - strand, within GFF5819 at 198.862 kb on + strand at 198.863 kb on - strand at 198.863 kb on - strand at 199.001 kb on + strand at 199.001 kb on + strand at 199.019 kb on - strand at 199.040 kb on + strand at 199.041 kb on - strand at 199.080 kb on + strand at 199.081 kb on - strand at 199.084 kb on - strand at 199.087 kb on + strand at 199.087 kb on + strand at 199.087 kb on + strand at 199.088 kb on - strand at 199.091 kb on + strand at 199.091 kb on + strand at 199.092 kb on - strand at 199.092 kb on - strand at 199.092 kb on - strand at 199.092 kb on - strand at 199.092 kb on - strand at 199.120 kb on + strand at 199.120 kb on + strand at 199.120 kb on + strand at 199.120 kb on + strand at 199.121 kb on - strand at 199.121 kb on - strand at 199.121 kb on - strand at 199.121 kb on - strand at 199.121 kb on - strand at 199.198 kb on - strand, within GFF5820 at 199.271 kb on - strand, within GFF5820 at 199.271 kb on - strand, within GFF5820 at 199.271 kb on - strand, within GFF5820 at 199.302 kb on - strand, within GFF5820 at 199.302 kb on - strand, within GFF5820
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 196,756 + GFF5817 0.28 -1.5 196,757 - GFF5817 0.28 -1.3 196,804 + GFF5817 0.31 +1.1 196,805 - GFF5817 0.32 -0.7 197,585 + GFF5817 0.88 +2.5 197,585 + GFF5817 0.88 +1.8 197,586 - GFF5817 0.88 -2.3 198,003 + GFF5818 0.41 -0.9 198,003 + GFF5818 0.41 +0.5 198,004 - GFF5818 0.41 +0.8 198,018 + GFF5818 0.43 -0.7 198,019 - GFF5818 0.44 -0.5 198,019 - GFF5818 0.44 -0.9 198,019 - GFF5818 0.44 -0.4 198,339 + -0.9 198,468 + -1.4 198,469 - -0.5 198,501 + +0.1 198,596 + +1.1 198,597 - +1.5 198,597 - -3.2 198,635 - +1.0 198,683 - GFF5819 0.25 -1.6 198,862 + -1.3 198,863 - +0.8 198,863 - +1.1 199,001 + +1.3 199,001 + -2.3 199,019 - -2.0 199,040 + -0.1 199,041 - +0.4 199,080 + +1.1 199,081 - -2.0 199,084 - -0.5 199,087 + -0.9 199,087 + +1.1 199,087 + -1.2 199,088 - +0.5 199,091 + -0.2 199,091 + -1.4 199,092 - +1.8 199,092 - -0.0 199,092 - -1.9 199,092 - -2.5 199,092 - -1.9 199,120 + -1.8 199,120 + +1.0 199,120 + +0.2 199,120 + -2.7 199,121 - -1.6 199,121 - -2.4 199,121 - -0.7 199,121 - -1.5 199,121 - +1.6 199,198 - GFF5820 0.11 -0.8 199,271 - GFF5820 0.21 +1.0 199,271 - GFF5820 0.21 -2.2 199,271 - GFF5820 0.21 -0.7 199,302 - GFF5820 0.25 +0.5 199,302 - GFF5820 0.25 -0.5
Or see this region's nucleotide sequence