Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5808 and GFF5809 are separated by 190 nucleotides GFF5809 and GFF5810 are separated by 4 nucleotides
GFF5808 - Putative oxidoreductase, at 183,771 to 184,781
GFF5808
GFF5809 - Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system, at 184,972 to 186,465
GFF5809
GFF5810 - Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA, at 186,470 to 187,705
GFF5810
Position (kb) 184
185
186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 184.156 kb on - strand, within GFF5808 at 184.242 kb on + strand, within GFF5808 at 184.242 kb on + strand, within GFF5808 at 184.256 kb on + strand, within GFF5808 at 184.320 kb on + strand, within GFF5808 at 184.320 kb on + strand, within GFF5808 at 184.321 kb on - strand, within GFF5808 at 184.342 kb on - strand, within GFF5808 at 184.416 kb on + strand, within GFF5808 at 184.417 kb on - strand, within GFF5808 at 184.452 kb on + strand, within GFF5808 at 184.452 kb on + strand, within GFF5808 at 184.452 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.516 kb on - strand, within GFF5808 at 184.704 kb on + strand at 184.704 kb on + strand at 184.705 kb on - strand at 184.925 kb on + strand at 184.957 kb on + strand at 184.957 kb on + strand at 184.958 kb on - strand at 184.958 kb on - strand at 184.958 kb on - strand at 184.997 kb on + strand at 185.059 kb on + strand at 185.059 kb on + strand at 185.515 kb on + strand, within GFF5809 at 185.515 kb on + strand, within GFF5809 at 185.515 kb on + strand, within GFF5809 at 185.516 kb on - strand, within GFF5809 at 185.575 kb on + strand, within GFF5809 at 185.609 kb on - strand, within GFF5809 at 185.953 kb on + strand, within GFF5809 at 185.953 kb on + strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.956 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.140 kb on - strand, within GFF5809 at 186.140 kb on - strand, within GFF5809 at 186.298 kb on + strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.686 kb on + strand, within GFF5810 at 186.914 kb on + strand, within GFF5810 at 186.914 kb on + strand, within GFF5810 at 186.915 kb on - strand, within GFF5810 at 187.026 kb on - strand, within GFF5810 at 187.026 kb on - strand, within GFF5810 at 187.254 kb on - strand, within GFF5810
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 184,156 - GFF5808 0.38 -0.3 184,242 + GFF5808 0.47 -1.5 184,242 + GFF5808 0.47 +1.4 184,256 + GFF5808 0.48 +0.6 184,320 + GFF5808 0.54 -1.8 184,320 + GFF5808 0.54 +0.1 184,321 - GFF5808 0.54 -0.7 184,342 - GFF5808 0.56 +0.4 184,416 + GFF5808 0.64 +1.1 184,417 - GFF5808 0.64 +2.6 184,452 + GFF5808 0.67 -1.3 184,452 + GFF5808 0.67 -0.8 184,452 + GFF5808 0.67 +0.5 184,515 + GFF5808 0.74 -0.0 184,515 + GFF5808 0.74 -1.2 184,515 + GFF5808 0.74 -1.7 184,515 + GFF5808 0.74 +0.6 184,516 - GFF5808 0.74 +0.6 184,704 + -2.0 184,704 + -0.4 184,705 - -0.6 184,925 + -0.5 184,957 + -2.4 184,957 + -0.5 184,958 - +0.7 184,958 - +1.8 184,958 - -1.0 184,997 + +0.3 185,059 + +0.4 185,059 + +0.9 185,515 + GFF5809 0.36 -1.0 185,515 + GFF5809 0.36 +0.1 185,515 + GFF5809 0.36 -0.9 185,516 - GFF5809 0.36 -1.6 185,575 + GFF5809 0.40 +1.0 185,609 - GFF5809 0.43 +0.5 185,953 + GFF5809 0.66 -2.3 185,953 + GFF5809 0.66 +0.1 185,954 - GFF5809 0.66 -1.3 185,954 - GFF5809 0.66 +2.4 185,954 - GFF5809 0.66 -1.8 185,954 - GFF5809 0.66 +0.5 185,954 - GFF5809 0.66 -0.5 185,954 - GFF5809 0.66 +2.1 185,956 + GFF5809 0.66 -0.3 186,139 + GFF5809 0.78 +1.5 186,139 + GFF5809 0.78 +1.1 186,139 + GFF5809 0.78 -0.7 186,139 + GFF5809 0.78 +1.3 186,140 - GFF5809 0.78 +0.8 186,140 - GFF5809 0.78 +1.0 186,298 + GFF5809 0.89 -0.8 186,299 - GFF5809 0.89 +0.8 186,299 - GFF5809 0.89 -1.2 186,299 - GFF5809 0.89 +0.5 186,686 + GFF5810 0.17 -2.0 186,914 + GFF5810 0.36 +0.1 186,914 + GFF5810 0.36 -2.8 186,915 - GFF5810 0.36 -0.4 187,026 - GFF5810 0.45 -0.7 187,026 - GFF5810 0.45 +0.5 187,254 - GFF5810 0.63 -0.1
Or see this region's nucleotide sequence