Strain Fitness in Variovorax sp. SCN45 around GFF578

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF577 and GFF578 are separated by 89 nucleotidesGFF578 and GFF579 are separated by 25 nucleotides GFF577 - TolA protein, at 621,376 to 622,299 GFF577 GFF578 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 622,389 to 624,119 GFF578 GFF579 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 624,145 to 627,663 GFF579 Position (kb) 622 623 624 625Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 621.602 kb on + strand, within GFF577at 622.036 kb on + strand, within GFF577at 622.036 kb on + strand, within GFF577at 622.037 kb on - strand, within GFF577at 622.328 kb on + strandat 622.328 kb on + strandat 622.329 kb on - strandat 622.329 kb on - strandat 622.329 kb on - strandat 622.377 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.518 kb on + strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.519 kb on - strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.522 kb on + strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.523 kb on - strandat 622.826 kb on + strand, within GFF578at 622.827 kb on - strand, within GFF578at 622.827 kb on - strand, within GFF578at 622.827 kb on - strand, within GFF578at 622.827 kb on - strand, within GFF578at 622.827 kb on - strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.860 kb on + strand, within GFF578at 622.861 kb on - strand, within GFF578at 622.861 kb on - strand, within GFF578at 622.861 kb on - strand, within GFF578at 622.861 kb on - strand, within GFF578at 622.861 kb on - strand, within GFF578at 622.861 kb on - strand, within GFF578at 622.861 kb on - strand, within GFF578at 623.118 kb on + strand, within GFF578at 623.119 kb on - strand, within GFF578at 623.217 kb on + strand, within GFF578at 623.217 kb on + strand, within GFF578at 623.217 kb on + strand, within GFF578at 623.217 kb on + strand, within GFF578at 623.218 kb on - strand, within GFF578at 623.218 kb on - strand, within GFF578at 623.218 kb on - strand, within GFF578at 623.226 kb on + strand, within GFF578at 623.226 kb on + strand, within GFF578at 623.226 kb on + strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.227 kb on - strand, within GFF578at 623.640 kb on + strand, within GFF578at 623.640 kb on + strand, within GFF578at 623.640 kb on + strand, within GFF578at 623.640 kb on + strand, within GFF578at 623.641 kb on - strand, within GFF578at 623.641 kb on - strand, within GFF578at 623.685 kb on + strand, within GFF578at 623.685 kb on + strand, within GFF578at 623.685 kb on + strand, within GFF578at 623.686 kb on - strand, within GFF578at 623.686 kb on - strand, within GFF578at 623.686 kb on - strand, within GFF578at 623.686 kb on - strand, within GFF578at 623.859 kb on + strand, within GFF578at 623.859 kb on + strand, within GFF578at 623.911 kb on - strand, within GFF578at 623.925 kb on + strand, within GFF578at 623.925 kb on + strand, within GFF578at 623.925 kb on + strand, within GFF578at 623.925 kb on + strand, within GFF578at 623.925 kb on + strand, within GFF578at 623.926 kb on - strand, within GFF578at 623.926 kb on - strand, within GFF578at 623.937 kb on + strand, within GFF578at 623.937 kb on + strand, within GFF578at 623.937 kb on + strand, within GFF578at 623.937 kb on + strand, within GFF578at 623.938 kb on - strand, within GFF578at 623.938 kb on - strand, within GFF578at 623.938 kb on - strand, within GFF578at 624.012 kb on + strandat 624.012 kb on + strandat 624.012 kb on + strandat 624.013 kb on - strandat 624.013 kb on - strandat 624.013 kb on - strandat 624.013 kb on - strandat 624.013 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
621,602 + GFF577 0.24 +0.6
622,036 + GFF577 0.71 -2.3
622,036 + GFF577 0.71 -1.8
622,037 - GFF577 0.72 -3.2
622,328 + +0.9
622,328 + -1.7
622,329 - -0.1
622,329 - +0.6
622,329 - +0.2
622,377 + -0.2
622,518 + +0.2
622,518 + -1.0
622,518 + +0.5
622,518 + -1.0
622,518 + -4.0
622,518 + -3.7
622,518 + +0.4
622,518 + -0.7
622,518 + -0.4
622,519 - -4.0
622,519 - -1.8
622,519 - +0.0
622,519 - -1.0
622,519 - -3.2
622,519 - +0.9
622,519 - +0.5
622,519 - -2.7
622,519 - -2.6
622,519 - +1.0
622,519 - +1.8
622,519 - +0.6
622,519 - -0.4
622,519 - -1.4
622,522 + -3.5
622,522 + -2.4
622,522 + -1.2
622,522 + +2.2
622,522 + +0.9
622,522 + -1.8
622,522 + -0.2
622,522 + +0.6
622,522 + -0.4
622,522 + +0.5
622,523 - -0.7
622,523 - -1.0
622,523 - -0.3
622,523 - -2.4
622,523 - +0.6
622,523 - -1.4
622,523 - -0.8
622,523 - -0.1
622,523 - -1.4
622,523 - +1.6
622,523 - +0.3
622,523 - +1.4
622,523 - +2.0
622,523 - -1.9
622,523 - -0.0
622,826 + GFF578 0.25 -0.2
622,827 - GFF578 0.25 -1.7
622,827 - GFF578 0.25 -0.4
622,827 - GFF578 0.25 +0.6
622,827 - GFF578 0.25 +1.3
622,827 - GFF578 0.25 -1.5
622,860 + GFF578 0.27 -0.6
622,860 + GFF578 0.27 +1.8
622,860 + GFF578 0.27 -2.1
622,860 + GFF578 0.27 +0.1
622,860 + GFF578 0.27 -1.7
622,860 + GFF578 0.27 -0.7
622,860 + GFF578 0.27 -1.5
622,860 + GFF578 0.27 -1.2
622,860 + GFF578 0.27 +0.1
622,861 - GFF578 0.27 -2.3
622,861 - GFF578 0.27 -1.4
622,861 - GFF578 0.27 -2.0
622,861 - GFF578 0.27 -1.0
622,861 - GFF578 0.27 +0.1
622,861 - GFF578 0.27 -0.4
622,861 - GFF578 0.27 +0.3
623,118 + GFF578 0.42 -1.5
623,119 - GFF578 0.42 -1.2
623,217 + GFF578 0.48 -1.1
623,217 + GFF578 0.48 -2.1
623,217 + GFF578 0.48 +2.4
623,217 + GFF578 0.48 -0.4
623,218 - GFF578 0.48 -0.4
623,218 - GFF578 0.48 -1.4
623,218 - GFF578 0.48 +0.0
623,226 + GFF578 0.48 +0.0
623,226 + GFF578 0.48 -0.1
623,226 + GFF578 0.48 -2.0
623,227 - GFF578 0.48 -0.6
623,227 - GFF578 0.48 -0.6
623,227 - GFF578 0.48 -0.4
623,227 - GFF578 0.48 -0.4
623,227 - GFF578 0.48 -1.8
623,227 - GFF578 0.48 +2.6
623,227 - GFF578 0.48 +0.6
623,227 - GFF578 0.48 -1.3
623,227 - GFF578 0.48 -1.0
623,227 - GFF578 0.48 -0.2
623,227 - GFF578 0.48 -1.4
623,227 - GFF578 0.48 -3.7
623,227 - GFF578 0.48 -1.5
623,640 + GFF578 0.72 -1.8
623,640 + GFF578 0.72 -0.4
623,640 + GFF578 0.72 +0.6
623,640 + GFF578 0.72 -3.2
623,641 - GFF578 0.72 +2.3
623,641 - GFF578 0.72 -1.3
623,685 + GFF578 0.75 +0.6
623,685 + GFF578 0.75 +1.0
623,685 + GFF578 0.75 -3.1
623,686 - GFF578 0.75 -2.2
623,686 - GFF578 0.75 +0.5
623,686 - GFF578 0.75 -1.4
623,686 - GFF578 0.75 -4.1
623,859 + GFF578 0.85 -0.7
623,859 + GFF578 0.85 -0.1
623,911 - GFF578 0.88 +0.2
623,925 + GFF578 0.89 +0.6
623,925 + GFF578 0.89 +1.2
623,925 + GFF578 0.89 -3.0
623,925 + GFF578 0.89 -0.7
623,925 + GFF578 0.89 -2.9
623,926 - GFF578 0.89 -0.6
623,926 - GFF578 0.89 -0.4
623,937 + GFF578 0.89 -1.5
623,937 + GFF578 0.89 -2.0
623,937 + GFF578 0.89 -2.5
623,937 + GFF578 0.89 -2.0
623,938 - GFF578 0.89 +3.0
623,938 - GFF578 0.89 -2.1
623,938 - GFF578 0.89 -0.5
624,012 + +0.9
624,012 + -0.4
624,012 + -0.2
624,013 - +0.2
624,013 - +0.2
624,013 - -1.5
624,013 - -1.3
624,013 - -1.5

Or see this region's nucleotide sequence