Strain Fitness in Variovorax sp. SCN45 around GFF5623

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5622 and GFF5623 are separated by 85 nucleotidesGFF5623 and GFF5624 are separated by 5 nucleotides GFF5622 - Transcriptional regulator, AsnC family, at 74 to 544 GFF5622 GFF5623 - Metal-dependent amidase/aminoacylase/carboxypeptidase, at 630 to 1,817 GFF5623 GFF5624 - Diaminopropionate ammonia-lyase (EC 4.3.1.15), at 1,823 to 3,052 GFF5624 Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.189 kb on + strand, within GFF5622at 0.189 kb on + strand, within GFF5622at 0.189 kb on + strand, within GFF5622at 0.189 kb on + strand, within GFF5622at 0.189 kb on + strand, within GFF5622at 0.190 kb on - strand, within GFF5622at 0.190 kb on - strand, within GFF5622at 0.190 kb on - strand, within GFF5622at 0.190 kb on - strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.249 kb on + strand, within GFF5622at 0.249 kb on + strand, within GFF5622at 0.249 kb on + strand, within GFF5622at 0.249 kb on + strand, within GFF5622at 0.249 kb on + strand, within GFF5622at 0.249 kb on + strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.387 kb on + strand, within GFF5622at 0.602 kb on - strandat 0.618 kb on + strandat 0.618 kb on + strandat 0.618 kb on + strandat 0.619 kb on - strandat 0.619 kb on - strandat 0.619 kb on - strandat 0.619 kb on - strandat 0.619 kb on - strandat 0.619 kb on - strandat 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 1.101 kb on + strand, within GFF5623at 1.101 kb on + strand, within GFF5623at 1.101 kb on + strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.404 kb on + strand, within GFF5623at 1.404 kb on + strand, within GFF5623at 1.404 kb on + strand, within GFF5623at 1.404 kb on + strand, within GFF5623at 1.405 kb on - strand, within GFF5623at 1.405 kb on - strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.722 kb on + strandat 1.722 kb on + strandat 1.722 kb on + strandat 1.722 kb on + strandat 1.723 kb on - strandat 1.761 kb on + strandat 1.761 kb on + strandat 1.762 kb on - strandat 1.762 kb on - strandat 1.860 kb on - strandat 1.860 kb on - strandat 1.860 kb on - strandat 2.327 kb on + strand, within GFF5624at 2.327 kb on + strand, within GFF5624at 2.327 kb on + strand, within GFF5624at 2.327 kb on + strand, within GFF5624at 2.327 kb on + strand, within GFF5624at 2.327 kb on + strand, within GFF5624at 2.399 kb on + strand, within GFF5624at 2.399 kb on + strand, within GFF5624at 2.399 kb on + strand, within GFF5624at 2.399 kb on + strand, within GFF5624at 2.400 kb on - strand, within GFF5624at 2.400 kb on - strand, within GFF5624at 2.400 kb on - strand, within GFF5624at 2.400 kb on - strand, within GFF5624at 2.400 kb on - strand, within GFF5624at 2.400 kb on - strand, within GFF5624at 2.408 kb on + strand, within GFF5624at 2.409 kb on - strand, within GFF5624at 2.571 kb on - strand, within GFF5624at 2.571 kb on - strand, within GFF5624at 2.571 kb on - strand, within GFF5624

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
75 + +1.5
75 + -2.5
75 + -2.5
75 + +2.6
75 + -1.2
75 + -1.3
75 + -0.5
75 + -0.5
75 + +0.5
75 + -0.3
75 + -1.7
75 + -0.7
75 + -0.2
189 + GFF5622 0.24 -2.0
189 + GFF5622 0.24 +0.7
189 + GFF5622 0.24 -2.6
189 + GFF5622 0.24 -0.5
189 + GFF5622 0.24 +0.1
190 - GFF5622 0.25 -0.2
190 - GFF5622 0.25 +1.1
190 - GFF5622 0.25 -0.2
190 - GFF5622 0.25 -0.0
246 + GFF5622 0.37 -0.7
246 + GFF5622 0.37 -2.3
246 + GFF5622 0.37 -2.7
246 + GFF5622 0.37 -1.6
246 + GFF5622 0.37 -1.2
246 + GFF5622 0.37 -0.8
246 + GFF5622 0.37 +2.1
246 + GFF5622 0.37 +0.6
247 - GFF5622 0.37 -1.5
247 - GFF5622 0.37 -0.6
247 - GFF5622 0.37 -1.4
247 - GFF5622 0.37 -2.0
247 - GFF5622 0.37 -0.1
247 - GFF5622 0.37 +0.8
247 - GFF5622 0.37 -0.8
247 - GFF5622 0.37 -0.7
247 - GFF5622 0.37 -1.0
247 - GFF5622 0.37 +0.0
247 - GFF5622 0.37 -0.1
247 - GFF5622 0.37 +0.1
247 - GFF5622 0.37 -1.1
249 + GFF5622 0.37 +0.5
249 + GFF5622 0.37 +1.4
249 + GFF5622 0.37 -1.0
249 + GFF5622 0.37 +0.3
249 + GFF5622 0.37 -0.0
249 + GFF5622 0.37 -1.6
250 - GFF5622 0.37 -0.2
250 - GFF5622 0.37 +0.8
250 - GFF5622 0.37 -0.5
250 - GFF5622 0.37 -1.5
250 - GFF5622 0.37 -0.7
250 - GFF5622 0.37 -0.6
250 - GFF5622 0.37 -2.3
250 - GFF5622 0.37 -0.7
387 + GFF5622 0.66 -1.0
602 - -1.7
618 + -0.2
618 + -2.5
618 + -1.1
619 - -1.8
619 - -0.7
619 - -1.5
619 - -0.1
619 - +0.8
619 - -0.2
944 + GFF5623 0.26 +2.5
944 + GFF5623 0.26 +2.3
944 + GFF5623 0.26 -1.0
944 + GFF5623 0.26 +0.7
944 + GFF5623 0.26 +0.1
944 + GFF5623 0.26 -0.2
944 + GFF5623 0.26 +0.1
944 + GFF5623 0.26 -3.1
944 + GFF5623 0.26 -0.3
944 + GFF5623 0.26 -0.6
944 + GFF5623 0.26 -1.0
944 + GFF5623 0.26 -0.7
944 + GFF5623 0.26 +1.1
944 + GFF5623 0.26 +0.2
944 + GFF5623 0.26 +1.3
944 + GFF5623 0.26 -0.6
944 + GFF5623 0.26 -0.4
944 + GFF5623 0.26 +0.2
944 + GFF5623 0.26 -0.5
944 + GFF5623 0.26 -1.8
945 - GFF5623 0.27 -2.7
945 - GFF5623 0.27 +0.5
945 - GFF5623 0.27 -2.0
945 - GFF5623 0.27 -0.2
945 - GFF5623 0.27 -1.5
945 - GFF5623 0.27 -3.3
945 - GFF5623 0.27 -0.3
945 - GFF5623 0.27 -2.3
945 - GFF5623 0.27 -1.7
945 - GFF5623 0.27 +1.8
945 - GFF5623 0.27 +1.1
945 - GFF5623 0.27 -0.6
1,101 + GFF5623 0.40 -0.8
1,101 + GFF5623 0.40 -0.5
1,101 + GFF5623 0.40 +1.3
1,102 - GFF5623 0.40 -2.2
1,102 - GFF5623 0.40 +1.1
1,102 - GFF5623 0.40 -0.9
1,102 - GFF5623 0.40 -0.7
1,102 - GFF5623 0.40 -2.0
1,102 - GFF5623 0.40 -3.5
1,404 + GFF5623 0.65 +1.9
1,404 + GFF5623 0.65 -2.1
1,404 + GFF5623 0.65 -0.8
1,404 + GFF5623 0.65 -0.3
1,405 - GFF5623 0.65 +0.3
1,405 - GFF5623 0.65 +2.7
1,497 + GFF5623 0.73 -0.5
1,497 + GFF5623 0.73 -0.9
1,497 + GFF5623 0.73 -0.7
1,497 + GFF5623 0.73 +0.3
1,497 + GFF5623 0.73 -1.0
1,498 - GFF5623 0.73 +0.6
1,498 - GFF5623 0.73 -1.0
1,498 - GFF5623 0.73 -1.2
1,498 - GFF5623 0.73 -0.1
1,498 - GFF5623 0.73 +1.8
1,498 - GFF5623 0.73 -1.0
1,498 - GFF5623 0.73 -2.5
1,722 + +0.8
1,722 + -0.7
1,722 + +0.1
1,722 + +0.7
1,723 - -2.4
1,761 + +2.2
1,761 + +1.5
1,762 - +2.3
1,762 - -1.0
1,860 - -2.1
1,860 - +3.9
1,860 - +0.3
2,327 + GFF5624 0.41 +1.1
2,327 + GFF5624 0.41 -0.7
2,327 + GFF5624 0.41 +0.9
2,327 + GFF5624 0.41 -0.2
2,327 + GFF5624 0.41 +0.0
2,327 + GFF5624 0.41 -1.6
2,399 + GFF5624 0.47 -2.0
2,399 + GFF5624 0.47 -0.6
2,399 + GFF5624 0.47 +0.1
2,399 + GFF5624 0.47 -0.9
2,400 - GFF5624 0.47 -0.7
2,400 - GFF5624 0.47 -1.1
2,400 - GFF5624 0.47 -0.5
2,400 - GFF5624 0.47 -2.1
2,400 - GFF5624 0.47 +1.4
2,400 - GFF5624 0.47 +0.3
2,408 + GFF5624 0.48 +0.4
2,409 - GFF5624 0.48 +0.2
2,571 - GFF5624 0.61 -1.5
2,571 - GFF5624 0.61 +0.4
2,571 - GFF5624 0.61 +1.5

Or see this region's nucleotide sequence