Strain Fitness in Variovorax sp. SCN45 around GFF5597

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5596 and GFF5597 are separated by 166 nucleotidesGFF5597 and GFF5598 are separated by 33 nucleotides GFF5596 - Spermidine/putrescine import ABC transporter permease protein PotB (TC 3.A.1.11.1), at 216,713 to 217,546 GFF5596 GFF5597 - Two-component transcriptional response regulator, LuxR family, at 217,713 to 218,345 GFF5597 GFF5598 - putative phospholipase D family protein, at 218,379 to 219,659 GFF5598 Position (kb) 217 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 216.788 kb on + strandat 216.803 kb on + strand, within GFF5596at 216.803 kb on + strand, within GFF5596at 216.804 kb on - strand, within GFF5596at 216.804 kb on - strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.872 kb on + strand, within GFF5596at 216.873 kb on - strand, within GFF5596at 216.873 kb on - strand, within GFF5596at 216.873 kb on - strand, within GFF5596at 216.885 kb on + strand, within GFF5596at 216.885 kb on + strand, within GFF5596at 216.885 kb on + strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.956 kb on + strand, within GFF5596at 216.956 kb on + strand, within GFF5596at 216.957 kb on - strand, within GFF5596at 216.957 kb on - strand, within GFF5596at 217.358 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.416 kb on - strand, within GFF5596at 217.416 kb on - strand, within GFF5596at 217.416 kb on - strand, within GFF5596at 217.416 kb on - strand, within GFF5596at 217.977 kb on + strand, within GFF5597at 218.013 kb on + strand, within GFF5597at 218.013 kb on + strand, within GFF5597at 218.013 kb on + strand, within GFF5597at 218.013 kb on + strand, within GFF5597at 218.014 kb on - strand, within GFF5597at 218.082 kb on + strand, within GFF5597at 218.082 kb on + strand, within GFF5597at 218.082 kb on + strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.259 kb on + strand, within GFF5597at 218.259 kb on + strand, within GFF5597at 218.259 kb on + strand, within GFF5597at 218.260 kb on - strand, within GFF5597at 218.260 kb on - strand, within GFF5597at 218.260 kb on - strand, within GFF5597at 218.260 kb on - strand, within GFF5597at 218.313 kb on + strandat 218.314 kb on - strandat 218.314 kb on - strandat 218.314 kb on - strandat 218.314 kb on - strandat 218.316 kb on + strandat 218.316 kb on + strandat 218.316 kb on + strandat 218.317 kb on - strandat 218.317 kb on - strandat 218.317 kb on - strandat 218.502 kb on + strandat 218.503 kb on - strandat 218.523 kb on + strand, within GFF5598at 218.523 kb on + strand, within GFF5598at 218.524 kb on - strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.664 kb on + strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.665 kb on - strand, within GFF5598at 218.670 kb on + strand, within GFF5598at 218.670 kb on + strand, within GFF5598at 218.670 kb on + strand, within GFF5598at 218.671 kb on - strand, within GFF5598at 218.671 kb on - strand, within GFF5598at 218.847 kb on + strand, within GFF5598at 218.847 kb on + strand, within GFF5598at 218.848 kb on - strand, within GFF5598at 218.988 kb on + strand, within GFF5598at 218.988 kb on + strand, within GFF5598at 218.989 kb on - strand, within GFF5598at 218.989 kb on - strand, within GFF5598at 218.989 kb on - strand, within GFF5598at 219.081 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.171 kb on + strand, within GFF5598at 219.172 kb on - strand, within GFF5598at 219.172 kb on - strand, within GFF5598at 219.172 kb on - strand, within GFF5598at 219.172 kb on - strand, within GFF5598at 219.172 kb on - strand, within GFF5598at 219.222 kb on + strand, within GFF5598at 219.222 kb on + strand, within GFF5598at 219.223 kb on - strand, within GFF5598at 219.223 kb on - strand, within GFF5598at 219.223 kb on - strand, within GFF5598

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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216,788 + -0.5
216,803 + GFF5596 0.11 +1.3
216,803 + GFF5596 0.11 +0.9
216,804 - GFF5596 0.11 +1.5
216,804 - GFF5596 0.11 +0.1
216,848 + GFF5596 0.16 -3.6
216,848 + GFF5596 0.16 +0.2
216,848 + GFF5596 0.16 +0.8
216,848 + GFF5596 0.16 +1.6
216,848 + GFF5596 0.16 -1.4
216,849 - GFF5596 0.16 -0.9
216,849 - GFF5596 0.16 -0.9
216,849 - GFF5596 0.16 +1.0
216,849 - GFF5596 0.16 +0.0
216,849 - GFF5596 0.16 +0.8
216,849 - GFF5596 0.16 -0.5
216,849 - GFF5596 0.16 -1.4
216,872 + GFF5596 0.19 -1.3
216,873 - GFF5596 0.19 +0.1
216,873 - GFF5596 0.19 +0.9
216,873 - GFF5596 0.19 -1.7
216,885 + GFF5596 0.21 -1.3
216,885 + GFF5596 0.21 +0.2
216,885 + GFF5596 0.21 -0.1
216,886 - GFF5596 0.21 -0.1
216,886 - GFF5596 0.21 -0.0
216,886 - GFF5596 0.21 -0.9
216,886 - GFF5596 0.21 -0.0
216,886 - GFF5596 0.21 -0.1
216,956 + GFF5596 0.29 -1.0
216,956 + GFF5596 0.29 -1.6
216,957 - GFF5596 0.29 -1.2
216,957 - GFF5596 0.29 -1.0
217,358 + GFF5596 0.77 +0.4
217,415 + GFF5596 0.84 -2.1
217,415 + GFF5596 0.84 -1.5
217,415 + GFF5596 0.84 +2.0
217,415 + GFF5596 0.84 -0.3
217,415 + GFF5596 0.84 -1.3
217,415 + GFF5596 0.84 -1.6
217,415 + GFF5596 0.84 +1.2
217,415 + GFF5596 0.84 +0.9
217,416 - GFF5596 0.84 -0.5
217,416 - GFF5596 0.84 +0.3
217,416 - GFF5596 0.84 +0.4
217,416 - GFF5596 0.84 -0.8
217,977 + GFF5597 0.42 +1.0
218,013 + GFF5597 0.47 +0.5
218,013 + GFF5597 0.47 +0.3
218,013 + GFF5597 0.47 -1.3
218,013 + GFF5597 0.47 -0.8
218,014 - GFF5597 0.48 -0.1
218,082 + GFF5597 0.58 +0.1
218,082 + GFF5597 0.58 -0.6
218,082 + GFF5597 0.58 -0.8
218,083 - GFF5597 0.58 +0.0
218,083 - GFF5597 0.58 -2.0
218,083 - GFF5597 0.58 +0.8
218,083 - GFF5597 0.58 -1.4
218,083 - GFF5597 0.58 +0.7
218,083 - GFF5597 0.58 -1.8
218,083 - GFF5597 0.58 +1.2
218,259 + GFF5597 0.86 +0.7
218,259 + GFF5597 0.86 -0.0
218,259 + GFF5597 0.86 -0.2
218,260 - GFF5597 0.86 -0.8
218,260 - GFF5597 0.86 -0.8
218,260 - GFF5597 0.86 +0.1
218,260 - GFF5597 0.86 -2.3
218,313 + +0.7
218,314 - -2.1
218,314 - +1.7
218,314 - -0.2
218,314 - -0.4
218,316 + -0.3
218,316 + +2.1
218,316 + +0.8
218,317 - -2.4
218,317 - +1.0
218,317 - +1.3
218,502 + -3.2
218,503 - -0.6
218,523 + GFF5598 0.11 +0.9
218,523 + GFF5598 0.11 -0.1
218,524 - GFF5598 0.11 -2.4
218,664 + GFF5598 0.22 +1.1
218,664 + GFF5598 0.22 -1.3
218,664 + GFF5598 0.22 +1.0
218,664 + GFF5598 0.22 +0.5
218,664 + GFF5598 0.22 +0.8
218,664 + GFF5598 0.22 -0.3
218,664 + GFF5598 0.22 -0.3
218,664 + GFF5598 0.22 -1.6
218,664 + GFF5598 0.22 +0.1
218,664 + GFF5598 0.22 -1.2
218,664 + GFF5598 0.22 +1.1
218,664 + GFF5598 0.22 +2.2
218,664 + GFF5598 0.22 +1.9
218,664 + GFF5598 0.22 -1.9
218,664 + GFF5598 0.22 +1.2
218,665 - GFF5598 0.22 +0.9
218,665 - GFF5598 0.22 -0.5
218,665 - GFF5598 0.22 -3.4
218,665 - GFF5598 0.22 -0.9
218,665 - GFF5598 0.22 +3.7
218,665 - GFF5598 0.22 -2.3
218,665 - GFF5598 0.22 +0.1
218,665 - GFF5598 0.22 +0.1
218,665 - GFF5598 0.22 -0.9
218,665 - GFF5598 0.22 +1.4
218,670 + GFF5598 0.23 -0.9
218,670 + GFF5598 0.23 -0.3
218,670 + GFF5598 0.23 -0.3
218,671 - GFF5598 0.23 -1.4
218,671 - GFF5598 0.23 +1.0
218,847 + GFF5598 0.37 +0.2
218,847 + GFF5598 0.37 -0.1
218,848 - GFF5598 0.37 +2.2
218,988 + GFF5598 0.48 -0.2
218,988 + GFF5598 0.48 -0.5
218,989 - GFF5598 0.48 -1.2
218,989 - GFF5598 0.48 -1.9
218,989 - GFF5598 0.48 +0.3
219,081 + GFF5598 0.55 -0.3
219,171 + GFF5598 0.62 -1.1
219,171 + GFF5598 0.62 -2.6
219,171 + GFF5598 0.62 +0.3
219,171 + GFF5598 0.62 -0.3
219,171 + GFF5598 0.62 +0.1
219,171 + GFF5598 0.62 +1.4
219,171 + GFF5598 0.62 -2.0
219,171 + GFF5598 0.62 +0.5
219,171 + GFF5598 0.62 -0.1
219,172 - GFF5598 0.62 +0.1
219,172 - GFF5598 0.62 -1.9
219,172 - GFF5598 0.62 -0.5
219,172 - GFF5598 0.62 +0.4
219,172 - GFF5598 0.62 -2.1
219,222 + GFF5598 0.66 +0.7
219,222 + GFF5598 0.66 +0.2
219,223 - GFF5598 0.66 +2.0
219,223 - GFF5598 0.66 -1.1
219,223 - GFF5598 0.66 -1.5

Or see this region's nucleotide sequence