Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5550 and GFF5551 are separated by 74 nucleotides GFF5551 and GFF5552 are separated by 2 nucleotides GFF5552 and GFF5553 are separated by 2 nucleotides GFF5553 and GFF5554 are separated by 12 nucleotides
GFF5550 - DNA protection during starvation protein, at 179,335 to 179,910
GFF5550
GFF5551 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 179,985 to 180,845
GFF5551
GFF5552 - MaoC domain protein dehydratase, at 180,848 to 181,333
GFF5552
GFF5553 - Pyrroline-5-carboxylate reductase (EC 1.5.1.2), at 181,336 to 182,193
GFF5553
GFF5554 - FIG00347521: hypothetical protein, at 182,206 to 183,366
GFF5554
Position (kb) 180
181
182 Strain fitness (log2 ratio) -2
-1
0
1 at 180.831 kb on + strand at 180.832 kb on - strand at 180.832 kb on - strand at 180.945 kb on - strand, within GFF5552 at 180.950 kb on - strand, within GFF5552 at 181.019 kb on + strand, within GFF5552 at 181.019 kb on + strand, within GFF5552 at 181.020 kb on - strand, within GFF5552 at 181.020 kb on - strand, within GFF5552 at 181.127 kb on + strand, within GFF5552 at 181.127 kb on + strand, within GFF5552 at 181.127 kb on + strand, within GFF5552 at 181.127 kb on + strand, within GFF5552 at 181.127 kb on + strand, within GFF5552 at 181.127 kb on + strand, within GFF5552 at 181.128 kb on - strand, within GFF5552 at 181.128 kb on - strand, within GFF5552 at 181.128 kb on - strand, within GFF5552 at 181.128 kb on - strand, within GFF5552 at 182.207 kb on + strand at 182.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 180,831 + -1.5 180,832 - -2.1 180,832 - -0.9 180,945 - GFF5552 0.20 -0.2 180,950 - GFF5552 0.21 -0.5 181,019 + GFF5552 0.35 +0.6 181,019 + GFF5552 0.35 -1.4 181,020 - GFF5552 0.35 +0.4 181,020 - GFF5552 0.35 -2.6 181,127 + GFF5552 0.57 -2.4 181,127 + GFF5552 0.57 -1.4 181,127 + GFF5552 0.57 -2.1 181,127 + GFF5552 0.57 -2.1 181,127 + GFF5552 0.57 +0.0 181,127 + GFF5552 0.57 -1.3 181,128 - GFF5552 0.58 -2.0 181,128 - GFF5552 0.58 +0.1 181,128 - GFF5552 0.58 -0.1 181,128 - GFF5552 0.58 -2.2 182,207 + -0.8 182,208 - -2.6
Or see this region's nucleotide sequence