Strain Fitness in Variovorax sp. SCN45 around GFF5472

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
100,965	+				-1.4
100,966	-				-0.5
101,232	+		GFF5471	0.33	-1.0
101,232	+		GFF5471	0.33	-1.5
101,233	-		GFF5471	0.33	-0.7
101,233	-		GFF5471	0.33	-2.9
101,337	+		GFF5471	0.45	-0.6
101,430	+		GFF5471	0.57	-1.4
101,430	+		GFF5471	0.57	-2.9
101,430	+		GFF5471	0.57	-1.6
101,430	+		GFF5471	0.57	-1.2
101,430	+		GFF5471	0.57	+0.9
101,430	+		GFF5471	0.57	+0.8
101,430	+		GFF5471	0.57	-1.3
101,431	-		GFF5471	0.57	+0.6
101,431	-		GFF5471	0.57	-0.5
101,431	-		GFF5471	0.57	+0.3
101,431	-		GFF5471	0.57	+0.3
101,431	-		GFF5471	0.57	-0.1
101,431	-		GFF5471	0.57	+2.2
101,431	-		GFF5471	0.57	+0.3
101,431	-		GFF5471	0.57	-0.4
101,821	+		GFF5472	0.21	-2.3
101,822	-		GFF5472	0.22	-1.5
101,827	-		GFF5472	0.26	-4.0
101,855	+		GFF5472	0.51	-1.2
101,855	+		GFF5472	0.51	+2.5
101,855	+		GFF5472	0.51	-0.1
101,856	-		GFF5472	0.52	-0.4
101,860	-		GFF5472	0.55	-3.0
101,885	+		GFF5472	0.77	-2.1
101,885	+		GFF5472	0.77	+0.1
101,885	+		GFF5472	0.77	-0.4
101,885	+		GFF5472	0.77	-0.3
101,885	+		GFF5472	0.77	+2.6
101,886	-		GFF5472	0.78	-1.5
101,886	-		GFF5472	0.78	-1.8
101,886	-		GFF5472	0.78	-0.3
101,886	-		GFF5472	0.78	-0.7
101,941	+				+1.0
101,942	-				-0.2
101,942	-				+1.2
101,942	-				-1.3
102,008	+				-0.0
102,008	+				-2.3
102,008	+				+0.5
102,008	+				+0.9
102,008	+				+0.8
102,008	+				-0.3
102,009	-				-2.2
102,009	-				-1.9
102,010	+				+0.6
102,010	+				-0.5
102,010	+				+0.5
102,010	+				-1.1
102,010	+				-1.5
102,010	+				-1.5
102,010	+				-1.1
102,010	+				+0.3
102,010	+				+0.8
102,010	+				-1.9
102,010	+				+1.0
102,010	+				-2.0
102,010	+				-1.6
102,010	+				-1.9
102,010	+				-2.5
102,010	+				+0.9
102,010	+				+0.3
102,010	+				+0.4
102,010	+				-1.4
102,010	+				-1.4
102,010	+				-2.1
102,010	+				-0.9
102,010	+				+0.5
102,011	-				-0.7
102,011	-				-1.1
102,011	-				+0.3
102,011	-				+3.8
102,011	-				+0.5
102,011	-				-1.6
102,011	-				+3.1
102,011	-				-1.1
102,011	-				+1.4
102,011	-				+0.1
102,011	-				-1.1
102,011	-				+1.8
102,011	-				-0.4
102,011	-				-1.3
102,011	-				+0.1
102,172	+				-1.1
102,172	+				-2.3
102,172	-				+0.6
102,173	-				+0.1
102,173	-				-1.4
102,173	-				-1.7
102,472	+		GFF5473	0.22	-0.4
102,472	+		GFF5473	0.22	-0.9
102,473	-		GFF5473	0.22	-1.3
102,473	-		GFF5473	0.22	-0.6
102,502	+		GFF5473	0.23	-1.4
102,502	+		GFF5473	0.23	-0.7
102,503	-		GFF5473	0.23	+0.9
102,517	+		GFF5473	0.23	-0.4
102,517	+		GFF5473	0.23	-0.6
102,518	-		GFF5473	0.24	-0.8
102,518	-		GFF5473	0.24	+1.6
102,598	+		GFF5473	0.27	-0.3
102,598	+		GFF5473	0.27	-0.2
102,599	-		GFF5473	0.27	+1.9
102,599	-		GFF5473	0.27	-0.1
102,868	+		GFF5473	0.38	-0.3
102,868	+		GFF5473	0.38	-2.0
102,869	-		GFF5473	0.38	-2.9
102,869	-		GFF5473	0.38	+0.6
102,869	-		GFF5473	0.38	-0.2
102,869	-		GFF5473	0.38	-0.5
102,869	-		GFF5473	0.38	+0.7
102,890	-		GFF5473	0.39	+0.2