Strain Fitness in Variovorax sp. SCN45 around GFF5469

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5468 and GFF5469 are separated by 129 nucleotidesGFF5469 and GFF5470 are separated by 7 nucleotidesGFF5470 and GFF5471 are separated by 11 nucleotides GFF5468 - FAD/FMN-containing dehydrogenase, at 97,775 to 99,157 GFF5468 GFF5469 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 99,287 to 100,141 GFF5469 GFF5470 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 100,149 to 100,952 GFF5470 GFF5471 - Creatinine amidohydrolase (EC 3.5.2.10), at 100,964 to 101,785 GFF5471 Position (kb) 99 100 101Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.358 kb on + strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.359 kb on - strand, within GFF5468at 98.361 kb on + strand, within GFF5468at 98.361 kb on + strand, within GFF5468at 98.451 kb on + strand, within GFF5468at 98.538 kb on + strand, within GFF5468at 98.886 kb on + strand, within GFF5468at 98.886 kb on + strand, within GFF5468at 98.886 kb on + strand, within GFF5468at 98.886 kb on + strand, within GFF5468at 98.886 kb on + strand, within GFF5468at 98.886 kb on + strand, within GFF5468at 98.887 kb on - strand, within GFF5468at 98.887 kb on - strand, within GFF5468at 98.887 kb on - strand, within GFF5468at 98.887 kb on - strand, within GFF5468at 98.887 kb on - strand, within GFF5468at 98.887 kb on - strand, within GFF5468at 99.033 kb on + strandat 99.033 kb on + strandat 99.033 kb on + strandat 99.033 kb on + strandat 99.034 kb on - strandat 99.034 kb on - strandat 99.144 kb on + strandat 99.145 kb on - strandat 99.145 kb on - strandat 99.145 kb on - strandat 99.145 kb on - strandat 99.237 kb on - strandat 99.288 kb on + strandat 99.288 kb on + strandat 99.289 kb on - strandat 99.289 kb on - strandat 99.549 kb on + strand, within GFF5469at 99.549 kb on + strand, within GFF5469at 99.550 kb on - strand, within GFF5469at 99.550 kb on - strand, within GFF5469at 99.550 kb on - strand, within GFF5469at 99.550 kb on - strand, within GFF5469at 99.576 kb on + strand, within GFF5469at 99.576 kb on + strand, within GFF5469at 99.577 kb on - strand, within GFF5469at 99.577 kb on - strand, within GFF5469at 99.606 kb on + strand, within GFF5469at 99.606 kb on + strand, within GFF5469at 99.606 kb on + strand, within GFF5469at 99.606 kb on + strand, within GFF5469at 99.607 kb on - strand, within GFF5469at 99.607 kb on - strand, within GFF5469at 99.607 kb on - strand, within GFF5469at 99.607 kb on - strand, within GFF5469at 99.607 kb on - strand, within GFF5469at 99.607 kb on - strand, within GFF5469at 99.732 kb on + strand, within GFF5469at 99.732 kb on + strand, within GFF5469at 99.732 kb on + strand, within GFF5469at 99.732 kb on + strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.733 kb on - strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.972 kb on + strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 99.973 kb on - strand, within GFF5469at 100.219 kb on + strandat 100.219 kb on + strandat 100.220 kb on - strandat 100.256 kb on - strand, within GFF5470at 100.330 kb on + strand, within GFF5470at 100.330 kb on + strand, within GFF5470at 100.330 kb on + strand, within GFF5470at 100.331 kb on - strand, within GFF5470at 100.331 kb on - strand, within GFF5470at 100.331 kb on - strand, within GFF5470at 100.331 kb on - strand, within GFF5470at 100.342 kb on + strand, within GFF5470at 100.342 kb on + strand, within GFF5470at 100.343 kb on - strand, within GFF5470at 100.343 kb on - strand, within GFF5470at 100.537 kb on + strand, within GFF5470at 100.538 kb on - strand, within GFF5470at 100.538 kb on - strand, within GFF5470at 100.965 kb on + strandat 100.966 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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98,358 + GFF5468 0.42 -0.5
98,358 + GFF5468 0.42 -2.4
98,358 + GFF5468 0.42 +0.4
98,358 + GFF5468 0.42 +2.5
98,358 + GFF5468 0.42 +4.3
98,358 + GFF5468 0.42 -1.5
98,358 + GFF5468 0.42 +2.5
98,358 + GFF5468 0.42 -0.5
98,359 - GFF5468 0.42 -0.5
98,359 - GFF5468 0.42 +0.6
98,359 - GFF5468 0.42 -1.7
98,359 - GFF5468 0.42 -3.0
98,359 - GFF5468 0.42 +0.3
98,361 + GFF5468 0.42 +0.2
98,361 + GFF5468 0.42 -0.2
98,451 + GFF5468 0.49 -1.4
98,538 + GFF5468 0.55 -0.9
98,886 + GFF5468 0.80 +1.2
98,886 + GFF5468 0.80 +1.0
98,886 + GFF5468 0.80 -0.5
98,886 + GFF5468 0.80 +0.4
98,886 + GFF5468 0.80 -2.3
98,886 + GFF5468 0.80 +1.0
98,887 - GFF5468 0.80 -0.9
98,887 - GFF5468 0.80 -3.4
98,887 - GFF5468 0.80 -1.6
98,887 - GFF5468 0.80 -0.6
98,887 - GFF5468 0.80 +0.5
98,887 - GFF5468 0.80 -0.6
99,033 + -2.5
99,033 + -1.4
99,033 + -1.4
99,033 + -0.2
99,034 - -2.2
99,034 - -2.8
99,144 + +3.5
99,145 - -1.7
99,145 - -4.0
99,145 - +0.7
99,145 - -1.1
99,237 - -1.9
99,288 + +1.5
99,288 + -0.9
99,289 - +0.1
99,289 - +0.7
99,549 + GFF5469 0.31 +1.3
99,549 + GFF5469 0.31 +0.1
99,550 - GFF5469 0.31 -0.1
99,550 - GFF5469 0.31 -1.7
99,550 - GFF5469 0.31 -1.1
99,550 - GFF5469 0.31 -2.2
99,576 + GFF5469 0.34 +0.1
99,576 + GFF5469 0.34 +0.1
99,577 - GFF5469 0.34 -0.0
99,577 - GFF5469 0.34 +2.5
99,606 + GFF5469 0.37 -0.9
99,606 + GFF5469 0.37 +0.9
99,606 + GFF5469 0.37 +1.2
99,606 + GFF5469 0.37 -0.3
99,607 - GFF5469 0.37 -0.7
99,607 - GFF5469 0.37 +0.5
99,607 - GFF5469 0.37 +0.4
99,607 - GFF5469 0.37 -0.5
99,607 - GFF5469 0.37 -1.4
99,607 - GFF5469 0.37 -0.1
99,732 + GFF5469 0.52 -0.8
99,732 + GFF5469 0.52 +0.1
99,732 + GFF5469 0.52 +1.8
99,732 + GFF5469 0.52 -1.0
99,733 - GFF5469 0.52 -1.1
99,733 - GFF5469 0.52 -0.9
99,733 - GFF5469 0.52 -1.5
99,733 - GFF5469 0.52 -1.5
99,733 - GFF5469 0.52 +0.1
99,733 - GFF5469 0.52 -0.6
99,733 - GFF5469 0.52 +1.2
99,733 - GFF5469 0.52 +1.5
99,733 - GFF5469 0.52 -2.1
99,972 + GFF5469 0.80 -3.0
99,972 + GFF5469 0.80 +0.3
99,972 + GFF5469 0.80 +0.8
99,972 + GFF5469 0.80 -0.0
99,972 + GFF5469 0.80 -0.9
99,972 + GFF5469 0.80 -3.1
99,973 - GFF5469 0.80 +0.9
99,973 - GFF5469 0.80 -0.3
99,973 - GFF5469 0.80 +0.1
99,973 - GFF5469 0.80 +0.9
99,973 - GFF5469 0.80 +1.1
99,973 - GFF5469 0.80 -0.9
99,973 - GFF5469 0.80 -1.6
99,973 - GFF5469 0.80 +1.9
99,973 - GFF5469 0.80 +0.5
99,973 - GFF5469 0.80 -2.2
99,973 - GFF5469 0.80 -1.2
99,973 - GFF5469 0.80 -0.5
100,219 + +0.1
100,219 + -0.5
100,220 - -1.1
100,256 - GFF5470 0.13 -0.7
100,330 + GFF5470 0.23 -2.6
100,330 + GFF5470 0.23 -2.5
100,330 + GFF5470 0.23 -0.6
100,331 - GFF5470 0.23 -0.9
100,331 - GFF5470 0.23 -2.8
100,331 - GFF5470 0.23 -0.9
100,331 - GFF5470 0.23 -2.9
100,342 + GFF5470 0.24 +1.2
100,342 + GFF5470 0.24 -4.0
100,343 - GFF5470 0.24 +0.9
100,343 - GFF5470 0.24 -2.5
100,537 + GFF5470 0.48 -1.3
100,538 - GFF5470 0.48 -1.4
100,538 - GFF5470 0.48 -2.0
100,965 + -1.4
100,966 - -0.5

Or see this region's nucleotide sequence