Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5440 and GFF5441 are separated by 87 nucleotides GFF5441 and GFF5442 are separated by 3 nucleotides
GFF5440 - RNA polymerase ECF-type sigma factor, at 65,327 to 66,217
GFF5440
GFF5441 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 66,305 to 66,766
GFF5441
GFF5442 - Septum-associated rare lipoprotein A, at 66,770 to 67,954
GFF5442
Position (kb) 66
67 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 65.319 kb on + strand at 65.319 kb on + strand at 65.319 kb on + strand at 65.320 kb on - strand at 65.320 kb on - strand at 65.320 kb on - strand at 65.384 kb on + strand at 65.384 kb on + strand at 65.385 kb on - strand at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 66.054 kb on - strand, within GFF5440 at 66.061 kb on + strand, within GFF5440 at 66.064 kb on + strand, within GFF5440 at 66.215 kb on + strand at 66.216 kb on - strand at 66.216 kb on - strand at 66.265 kb on + strand at 66.266 kb on - strand at 66.266 kb on - strand at 66.458 kb on + strand, within GFF5441 at 66.459 kb on - strand, within GFF5441 at 66.459 kb on - strand, within GFF5441 at 66.459 kb on - strand, within GFF5441 at 66.459 kb on - strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 67.214 kb on + strand, within GFF5442 at 67.214 kb on + strand, within GFF5442 at 67.215 kb on - strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.224 kb on + strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.225 kb on - strand, within GFF5442 at 67.371 kb on + strand, within GFF5442 at 67.371 kb on + strand, within GFF5442 at 67.371 kb on + strand, within GFF5442 at 67.372 kb on - strand, within GFF5442 at 67.372 kb on - strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.485 kb on + strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.486 kb on - strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.581 kb on + strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.582 kb on - strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.623 kb on + strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.624 kb on - strand, within GFF5442 at 67.632 kb on + strand, within GFF5442 at 67.632 kb on + strand, within GFF5442 at 67.632 kb on + strand, within GFF5442 at 67.632 kb on + strand, within GFF5442 at 67.632 kb on + strand, within GFF5442 at 67.632 kb on + strand, within GFF5442 at 67.633 kb on - strand, within GFF5442 at 67.633 kb on - strand, within GFF5442 at 67.677 kb on + strand, within GFF5442 at 67.677 kb on + strand, within GFF5442 at 67.732 kb on - strand, within GFF5442 at 67.732 kb on - strand, within GFF5442 at 67.752 kb on + strand, within GFF5442 at 67.752 kb on + strand, within GFF5442 at 67.752 kb on + strand, within GFF5442 at 67.752 kb on + strand, within GFF5442 at 67.752 kb on + strand, within GFF5442 at 67.753 kb on - strand, within GFF5442 at 67.753 kb on - strand, within GFF5442 at 67.753 kb on - strand, within GFF5442
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 65,319 + +0.9 65,319 + +1.5 65,319 + -2.3 65,320 - +0.3 65,320 - -0.5 65,320 - +2.2 65,384 + -2.8 65,384 + +0.7 65,385 - -0.5 65,555 + GFF5440 0.26 -1.0 65,555 + GFF5440 0.26 -0.7 65,555 + GFF5440 0.26 -0.5 65,555 + GFF5440 0.26 -1.8 65,555 + GFF5440 0.26 -2.5 65,555 + GFF5440 0.26 +1.6 65,555 + GFF5440 0.26 +0.0 65,555 + GFF5440 0.26 -2.1 65,555 + GFF5440 0.26 -2.0 65,555 + GFF5440 0.26 -0.1 65,556 - GFF5440 0.26 -0.1 65,556 - GFF5440 0.26 -0.3 65,556 - GFF5440 0.26 -0.1 65,556 - GFF5440 0.26 +0.5 65,556 - GFF5440 0.26 -0.3 65,556 - GFF5440 0.26 -2.2 65,556 - GFF5440 0.26 -1.1 65,556 - GFF5440 0.26 -0.6 65,556 - GFF5440 0.26 +0.0 65,556 - GFF5440 0.26 +0.9 65,556 - GFF5440 0.26 -0.2 65,556 - GFF5440 0.26 +1.8 65,556 - GFF5440 0.26 -0.7 65,556 - GFF5440 0.26 -2.6 65,556 - GFF5440 0.26 +1.2 65,556 - GFF5440 0.26 +0.7 65,556 - GFF5440 0.26 -0.9 65,556 - GFF5440 0.26 +0.7 65,556 - GFF5440 0.26 -1.3 65,556 - GFF5440 0.26 -3.7 65,556 - GFF5440 0.26 -1.7 65,556 - GFF5440 0.26 -1.1 65,556 - GFF5440 0.26 -1.4 66,054 - GFF5440 0.82 -1.5 66,061 + GFF5440 0.82 +0.1 66,064 + GFF5440 0.83 -0.5 66,215 + +0.9 66,216 - -1.7 66,216 - -2.3 66,265 + -0.4 66,266 - -0.2 66,266 - -1.7 66,458 + GFF5441 0.33 +1.4 66,459 - GFF5441 0.33 +0.9 66,459 - GFF5441 0.33 -0.0 66,459 - GFF5441 0.33 -0.3 66,459 - GFF5441 0.33 -0.9 66,551 + GFF5441 0.53 +0.7 66,551 + GFF5441 0.53 +1.4 66,551 + GFF5441 0.53 -1.7 66,551 + GFF5441 0.53 +0.5 66,551 + GFF5441 0.53 -2.1 66,552 - GFF5441 0.53 +0.1 66,552 - GFF5441 0.53 +1.0 66,552 - GFF5441 0.53 -0.9 66,552 - GFF5441 0.53 -0.2 66,552 - GFF5441 0.53 +1.5 66,552 - GFF5441 0.53 +0.8 67,214 + GFF5442 0.37 +0.5 67,214 + GFF5442 0.37 -0.0 67,215 - GFF5442 0.38 -1.0 67,224 + GFF5442 0.38 -1.8 67,224 + GFF5442 0.38 +0.2 67,224 + GFF5442 0.38 -2.6 67,224 + GFF5442 0.38 -0.1 67,224 + GFF5442 0.38 -0.3 67,224 + GFF5442 0.38 +0.7 67,224 + GFF5442 0.38 -1.4 67,224 + GFF5442 0.38 -0.2 67,224 + GFF5442 0.38 -1.1 67,224 + GFF5442 0.38 -1.0 67,225 - GFF5442 0.38 -0.7 67,225 - GFF5442 0.38 -3.0 67,225 - GFF5442 0.38 -1.1 67,225 - GFF5442 0.38 -1.7 67,225 - GFF5442 0.38 +1.9 67,225 - GFF5442 0.38 -0.7 67,225 - GFF5442 0.38 +0.7 67,371 + GFF5442 0.51 -2.2 67,371 + GFF5442 0.51 +1.4 67,371 + GFF5442 0.51 -0.3 67,372 - GFF5442 0.51 -0.5 67,372 - GFF5442 0.51 +1.3 67,485 + GFF5442 0.60 -0.5 67,485 + GFF5442 0.60 +0.6 67,485 + GFF5442 0.60 +0.9 67,485 + GFF5442 0.60 -0.3 67,485 + GFF5442 0.60 -1.8 67,485 + GFF5442 0.60 +1.4 67,485 + GFF5442 0.60 -1.4 67,485 + GFF5442 0.60 +0.7 67,485 + GFF5442 0.60 -3.9 67,485 + GFF5442 0.60 -1.5 67,485 + GFF5442 0.60 -0.2 67,486 - GFF5442 0.60 +0.3 67,486 - GFF5442 0.60 +1.2 67,486 - GFF5442 0.60 +0.2 67,486 - GFF5442 0.60 -1.6 67,486 - GFF5442 0.60 +0.2 67,486 - GFF5442 0.60 -0.7 67,486 - GFF5442 0.60 -1.7 67,581 + GFF5442 0.68 +1.5 67,581 + GFF5442 0.68 +0.5 67,581 + GFF5442 0.68 -0.9 67,581 + GFF5442 0.68 -1.1 67,581 + GFF5442 0.68 -0.7 67,581 + GFF5442 0.68 -2.3 67,581 + GFF5442 0.68 -1.1 67,581 + GFF5442 0.68 -2.3 67,581 + GFF5442 0.68 +1.5 67,581 + GFF5442 0.68 -1.5 67,581 + GFF5442 0.68 +1.4 67,581 + GFF5442 0.68 +0.5 67,581 + GFF5442 0.68 -0.5 67,581 + GFF5442 0.68 +0.1 67,581 + GFF5442 0.68 +0.9 67,582 - GFF5442 0.69 +1.0 67,582 - GFF5442 0.69 -1.1 67,582 - GFF5442 0.69 -0.4 67,582 - GFF5442 0.69 -1.2 67,582 - GFF5442 0.69 -3.4 67,582 - GFF5442 0.69 -0.9 67,582 - GFF5442 0.69 +0.9 67,582 - GFF5442 0.69 -2.4 67,582 - GFF5442 0.69 -2.2 67,582 - GFF5442 0.69 +1.2 67,582 - GFF5442 0.69 -2.8 67,582 - GFF5442 0.69 -1.0 67,623 + GFF5442 0.72 +0.5 67,623 + GFF5442 0.72 -0.3 67,623 + GFF5442 0.72 +0.1 67,623 + GFF5442 0.72 +0.6 67,623 + GFF5442 0.72 -2.6 67,623 + GFF5442 0.72 -1.2 67,623 + GFF5442 0.72 +0.7 67,623 + GFF5442 0.72 +1.1 67,623 + GFF5442 0.72 +0.5 67,623 + GFF5442 0.72 -0.5 67,623 + GFF5442 0.72 +0.9 67,623 + GFF5442 0.72 +0.8 67,623 + GFF5442 0.72 -0.7 67,623 + GFF5442 0.72 +0.9 67,623 + GFF5442 0.72 -0.1 67,623 + GFF5442 0.72 -0.4 67,623 + GFF5442 0.72 -2.3 67,623 + GFF5442 0.72 -2.1 67,623 + GFF5442 0.72 -1.1 67,623 + GFF5442 0.72 +0.0 67,623 + GFF5442 0.72 +0.6 67,623 + GFF5442 0.72 -1.5 67,623 + GFF5442 0.72 +1.0 67,623 + GFF5442 0.72 +1.8 67,623 + GFF5442 0.72 +0.9 67,623 + GFF5442 0.72 +0.8 67,623 + GFF5442 0.72 -1.7 67,623 + GFF5442 0.72 -0.4 67,623 + GFF5442 0.72 +1.6 67,623 + GFF5442 0.72 -0.1 67,624 - GFF5442 0.72 -0.1 67,624 - GFF5442 0.72 +1.5 67,624 - GFF5442 0.72 +1.0 67,624 - GFF5442 0.72 -0.2 67,624 - GFF5442 0.72 -0.5 67,624 - GFF5442 0.72 +0.1 67,624 - GFF5442 0.72 +1.1 67,624 - GFF5442 0.72 -1.0 67,624 - GFF5442 0.72 +1.0 67,624 - GFF5442 0.72 +0.1 67,624 - GFF5442 0.72 -0.1 67,624 - GFF5442 0.72 -2.5 67,624 - GFF5442 0.72 -0.8 67,624 - GFF5442 0.72 -0.5 67,624 - GFF5442 0.72 -3.6 67,624 - GFF5442 0.72 +1.9 67,624 - GFF5442 0.72 +0.6 67,624 - GFF5442 0.72 +0.5 67,624 - GFF5442 0.72 -1.8 67,624 - GFF5442 0.72 +0.1 67,624 - GFF5442 0.72 -2.1 67,624 - GFF5442 0.72 +1.1 67,624 - GFF5442 0.72 +1.5 67,624 - GFF5442 0.72 -2.5 67,624 - GFF5442 0.72 -0.1 67,624 - GFF5442 0.72 -2.5 67,624 - GFF5442 0.72 -0.1 67,624 - GFF5442 0.72 +0.1 67,624 - GFF5442 0.72 +0.0 67,624 - GFF5442 0.72 -0.3 67,624 - GFF5442 0.72 -0.6 67,624 - GFF5442 0.72 -1.3 67,624 - GFF5442 0.72 -0.1 67,624 - GFF5442 0.72 -0.1 67,624 - GFF5442 0.72 -2.4 67,624 - GFF5442 0.72 -1.9 67,624 - GFF5442 0.72 +1.8 67,624 - GFF5442 0.72 -1.9 67,632 + GFF5442 0.73 -2.2 67,632 + GFF5442 0.73 -0.1 67,632 + GFF5442 0.73 -0.5 67,632 + GFF5442 0.73 -0.9 67,632 + GFF5442 0.73 -1.2 67,632 + GFF5442 0.73 -0.3 67,633 - GFF5442 0.73 -0.5 67,633 - GFF5442 0.73 -0.8 67,677 + GFF5442 0.77 -0.7 67,677 + GFF5442 0.77 +1.5 67,732 - GFF5442 0.81 -1.0 67,732 - GFF5442 0.81 +0.9 67,752 + GFF5442 0.83 -0.1 67,752 + GFF5442 0.83 -1.0 67,752 + GFF5442 0.83 -1.8 67,752 + GFF5442 0.83 +0.2 67,752 + GFF5442 0.83 -2.2 67,753 - GFF5442 0.83 -0.3 67,753 - GFF5442 0.83 +0.8 67,753 - GFF5442 0.83 -0.9
Or see this region's nucleotide sequence