Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5439 and GFF5440 are separated by 86 nucleotides GFF5440 and GFF5441 are separated by 87 nucleotides GFF5441 and GFF5442 are separated by 3 nucleotides
GFF5439 - FIG00932072: hypothetical protein, at 64,383 to 65,240
GFF5439
GFF5440 - RNA polymerase ECF-type sigma factor, at 65,327 to 66,217
GFF5440
GFF5441 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 66,305 to 66,766
GFF5441
GFF5442 - Septum-associated rare lipoprotein A, at 66,770 to 67,954
GFF5442
Position (kb) 65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 64.355 kb on + strand at 64.355 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.370 kb on + strand at 64.371 kb on - strand at 64.371 kb on - strand at 64.371 kb on - strand at 64.371 kb on - strand at 64.371 kb on - strand at 64.371 kb on - strand at 64.371 kb on - strand at 64.371 kb on - strand at 64.389 kb on + strand at 64.389 kb on + strand at 64.390 kb on - strand at 64.499 kb on - strand, within GFF5439 at 64.641 kb on + strand, within GFF5439 at 64.641 kb on + strand, within GFF5439 at 64.641 kb on + strand, within GFF5439 at 64.641 kb on + strand, within GFF5439 at 64.641 kb on + strand, within GFF5439 at 64.641 kb on + strand, within GFF5439 at 64.641 kb on + strand, within GFF5439 at 64.641 kb on + strand, within GFF5439 at 64.641 kb on + strand, within GFF5439 at 64.641 kb on + strand, within GFF5439 at 64.642 kb on - strand, within GFF5439 at 64.642 kb on - strand, within GFF5439 at 64.642 kb on - strand, within GFF5439 at 64.642 kb on - strand, within GFF5439 at 64.642 kb on - strand, within GFF5439 at 64.642 kb on - strand, within GFF5439 at 64.777 kb on - strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.824 kb on + strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.825 kb on - strand, within GFF5439 at 64.866 kb on + strand, within GFF5439 at 64.866 kb on + strand, within GFF5439 at 64.866 kb on + strand, within GFF5439 at 64.867 kb on - strand, within GFF5439 at 64.867 kb on - strand, within GFF5439 at 64.867 kb on - strand, within GFF5439 at 64.867 kb on - strand, within GFF5439 at 64.875 kb on + strand, within GFF5439 at 64.875 kb on + strand, within GFF5439 at 64.875 kb on + strand, within GFF5439 at 64.875 kb on + strand, within GFF5439 at 64.875 kb on + strand, within GFF5439 at 64.875 kb on + strand, within GFF5439 at 64.875 kb on + strand, within GFF5439 at 64.875 kb on + strand, within GFF5439 at 64.875 kb on + strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 64.876 kb on - strand, within GFF5439 at 65.083 kb on - strand, within GFF5439 at 65.185 kb on - strand at 65.226 kb on + strand at 65.226 kb on + strand at 65.226 kb on + strand at 65.227 kb on - strand at 65.227 kb on - strand at 65.227 kb on - strand at 65.227 kb on - strand at 65.238 kb on + strand at 65.238 kb on + strand at 65.238 kb on + strand at 65.239 kb on - strand at 65.239 kb on - strand at 65.239 kb on - strand at 65.239 kb on - strand at 65.239 kb on - strand at 65.239 kb on - strand at 65.319 kb on + strand at 65.319 kb on + strand at 65.319 kb on + strand at 65.320 kb on - strand at 65.320 kb on - strand at 65.320 kb on - strand at 65.384 kb on + strand at 65.384 kb on + strand at 65.385 kb on - strand at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.555 kb on + strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 65.556 kb on - strand, within GFF5440 at 66.054 kb on - strand, within GFF5440 at 66.061 kb on + strand, within GFF5440 at 66.064 kb on + strand, within GFF5440 at 66.215 kb on + strand at 66.216 kb on - strand at 66.216 kb on - strand at 66.265 kb on + strand at 66.266 kb on - strand at 66.266 kb on - strand at 66.458 kb on + strand, within GFF5441 at 66.459 kb on - strand, within GFF5441 at 66.459 kb on - strand, within GFF5441 at 66.459 kb on - strand, within GFF5441 at 66.459 kb on - strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.551 kb on + strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 66.552 kb on - strand, within GFF5441 at 67.214 kb on + strand, within GFF5442 at 67.214 kb on + strand, within GFF5442 at 67.215 kb on - strand, within GFF5442
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 64,355 + -0.3 64,355 + -1.2 64,370 + +3.6 64,370 + +0.7 64,370 + +0.3 64,370 + +0.7 64,370 + -1.1 64,370 + +0.4 64,370 + +0.1 64,370 + -0.9 64,370 + -1.8 64,370 + +0.3 64,370 + +1.0 64,370 + -2.1 64,370 + -0.3 64,370 + -1.2 64,370 + -1.2 64,370 + -2.1 64,370 + -0.1 64,371 - +1.5 64,371 - +2.5 64,371 - +2.5 64,371 - +1.5 64,371 - +2.5 64,371 - +2.5 64,371 - -0.8 64,371 - +2.5 64,389 + +2.5 64,389 + +0.1 64,390 - +0.1 64,499 - GFF5439 0.14 +2.5 64,641 + GFF5439 0.30 +2.5 64,641 + GFF5439 0.30 +2.5 64,641 + GFF5439 0.30 +2.5 64,641 + GFF5439 0.30 +2.5 64,641 + GFF5439 0.30 +1.5 64,641 + GFF5439 0.30 -2.5 64,641 + GFF5439 0.30 -1.1 64,641 + GFF5439 0.30 -1.3 64,641 + GFF5439 0.30 -1.1 64,641 + GFF5439 0.30 +0.5 64,642 - GFF5439 0.30 +1.5 64,642 - GFF5439 0.30 +2.5 64,642 - GFF5439 0.30 +2.5 64,642 - GFF5439 0.30 +0.5 64,642 - GFF5439 0.30 +3.2 64,642 - GFF5439 0.30 +0.5 64,777 - GFF5439 0.46 -1.0 64,824 + GFF5439 0.51 -0.1 64,824 + GFF5439 0.51 -0.9 64,824 + GFF5439 0.51 +1.5 64,824 + GFF5439 0.51 +0.1 64,824 + GFF5439 0.51 +1.8 64,824 + GFF5439 0.51 +2.5 64,824 + GFF5439 0.51 -0.1 64,824 + GFF5439 0.51 +3.7 64,824 + GFF5439 0.51 +1.6 64,824 + GFF5439 0.51 +1.5 64,824 + GFF5439 0.51 +0.5 64,824 + GFF5439 0.51 +0.9 64,824 + GFF5439 0.51 +0.5 64,824 + GFF5439 0.51 +0.1 64,824 + GFF5439 0.51 +2.5 64,824 + GFF5439 0.51 -1.1 64,824 + GFF5439 0.51 +2.6 64,824 + GFF5439 0.51 +1.5 64,824 + GFF5439 0.51 +1.0 64,824 + GFF5439 0.51 +0.5 64,824 + GFF5439 0.51 +1.5 64,825 - GFF5439 0.52 +2.5 64,825 - GFF5439 0.52 -0.1 64,825 - GFF5439 0.52 +0.1 64,825 - GFF5439 0.52 +0.9 64,825 - GFF5439 0.52 +0.9 64,825 - GFF5439 0.52 +1.5 64,825 - GFF5439 0.52 -1.6 64,825 - GFF5439 0.52 +1.5 64,825 - GFF5439 0.52 +0.5 64,825 - GFF5439 0.52 -0.3 64,825 - GFF5439 0.52 +1.5 64,825 - GFF5439 0.52 +0.6 64,825 - GFF5439 0.52 -0.3 64,825 - GFF5439 0.52 +1.7 64,825 - GFF5439 0.52 -0.1 64,825 - GFF5439 0.52 -0.3 64,825 - GFF5439 0.52 +0.9 64,825 - GFF5439 0.52 +2.5 64,825 - GFF5439 0.52 +5.3 64,825 - GFF5439 0.52 -1.5 64,825 - GFF5439 0.52 +1.5 64,825 - GFF5439 0.52 +0.1 64,825 - GFF5439 0.52 -0.1 64,825 - GFF5439 0.52 +1.5 64,825 - GFF5439 0.52 +1.5 64,825 - GFF5439 0.52 +0.9 64,825 - GFF5439 0.52 +0.5 64,825 - GFF5439 0.52 -0.3 64,825 - GFF5439 0.52 +0.9 64,825 - GFF5439 0.52 +2.5 64,825 - GFF5439 0.52 -0.9 64,825 - GFF5439 0.52 +2.7 64,825 - GFF5439 0.52 +1.5 64,825 - GFF5439 0.52 +0.1 64,825 - GFF5439 0.52 +1.5 64,866 + GFF5439 0.56 +2.5 64,866 + GFF5439 0.56 +0.5 64,866 + GFF5439 0.56 -1.5 64,867 - GFF5439 0.56 +1.5 64,867 - GFF5439 0.56 -0.1 64,867 - GFF5439 0.56 +2.5 64,867 - GFF5439 0.56 +2.5 64,875 + GFF5439 0.57 +2.5 64,875 + GFF5439 0.57 +2.5 64,875 + GFF5439 0.57 +2.5 64,875 + GFF5439 0.57 -0.3 64,875 + GFF5439 0.57 -0.0 64,875 + GFF5439 0.57 +1.5 64,875 + GFF5439 0.57 +1.5 64,875 + GFF5439 0.57 -0.7 64,875 + GFF5439 0.57 -0.5 64,876 - GFF5439 0.57 +2.5 64,876 - GFF5439 0.57 +2.5 64,876 - GFF5439 0.57 +0.9 64,876 - GFF5439 0.57 +2.5 64,876 - GFF5439 0.57 +1.5 64,876 - GFF5439 0.57 +0.5 64,876 - GFF5439 0.57 +2.8 64,876 - GFF5439 0.57 +1.5 64,876 - GFF5439 0.57 +0.5 64,876 - GFF5439 0.57 +2.5 64,876 - GFF5439 0.57 +1.5 64,876 - GFF5439 0.57 +1.5 64,876 - GFF5439 0.57 -0.9 65,083 - GFF5439 0.82 +0.5 65,185 - -2.3 65,226 + -0.3 65,226 + +0.4 65,226 + -0.3 65,227 - -0.3 65,227 - +0.7 65,227 - -2.5 65,227 - -0.3 65,238 + -0.3 65,238 + +1.6 65,238 + -2.6 65,239 - -1.6 65,239 - +1.0 65,239 - +2.5 65,239 - -2.3 65,239 - +1.1 65,239 - -1.8 65,319 + +0.9 65,319 + +1.5 65,319 + -2.3 65,320 - +0.3 65,320 - -0.5 65,320 - +2.2 65,384 + -2.8 65,384 + +0.7 65,385 - -0.5 65,555 + GFF5440 0.26 -1.0 65,555 + GFF5440 0.26 -0.7 65,555 + GFF5440 0.26 -0.5 65,555 + GFF5440 0.26 -1.8 65,555 + GFF5440 0.26 -2.5 65,555 + GFF5440 0.26 +1.6 65,555 + GFF5440 0.26 +0.0 65,555 + GFF5440 0.26 -2.1 65,555 + GFF5440 0.26 -2.0 65,555 + GFF5440 0.26 -0.1 65,556 - GFF5440 0.26 -0.1 65,556 - GFF5440 0.26 -0.3 65,556 - GFF5440 0.26 -0.1 65,556 - GFF5440 0.26 +0.5 65,556 - GFF5440 0.26 -0.3 65,556 - GFF5440 0.26 -2.2 65,556 - GFF5440 0.26 -1.1 65,556 - GFF5440 0.26 -0.6 65,556 - GFF5440 0.26 +0.0 65,556 - GFF5440 0.26 +0.9 65,556 - GFF5440 0.26 -0.2 65,556 - GFF5440 0.26 +1.8 65,556 - GFF5440 0.26 -0.7 65,556 - GFF5440 0.26 -2.6 65,556 - GFF5440 0.26 +1.2 65,556 - GFF5440 0.26 +0.7 65,556 - GFF5440 0.26 -0.9 65,556 - GFF5440 0.26 +0.7 65,556 - GFF5440 0.26 -1.3 65,556 - GFF5440 0.26 -3.7 65,556 - GFF5440 0.26 -1.7 65,556 - GFF5440 0.26 -1.1 65,556 - GFF5440 0.26 -1.4 66,054 - GFF5440 0.82 -1.5 66,061 + GFF5440 0.82 +0.1 66,064 + GFF5440 0.83 -0.5 66,215 + +0.9 66,216 - -1.7 66,216 - -2.3 66,265 + -0.4 66,266 - -0.2 66,266 - -1.7 66,458 + GFF5441 0.33 +1.4 66,459 - GFF5441 0.33 +0.9 66,459 - GFF5441 0.33 -0.0 66,459 - GFF5441 0.33 -0.3 66,459 - GFF5441 0.33 -0.9 66,551 + GFF5441 0.53 +0.7 66,551 + GFF5441 0.53 +1.4 66,551 + GFF5441 0.53 -1.7 66,551 + GFF5441 0.53 +0.5 66,551 + GFF5441 0.53 -2.1 66,552 - GFF5441 0.53 +0.1 66,552 - GFF5441 0.53 +1.0 66,552 - GFF5441 0.53 -0.9 66,552 - GFF5441 0.53 -0.2 66,552 - GFF5441 0.53 +1.5 66,552 - GFF5441 0.53 +0.8 67,214 + GFF5442 0.37 +0.5 67,214 + GFF5442 0.37 -0.0 67,215 - GFF5442 0.38 -1.0
Or see this region's nucleotide sequence