Strain Fitness in Variovorax sp. SCN45 around GFF5366

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5365 and GFF5366 are separated by 296 nucleotidesGFF5366 and GFF5367 overlap by 4 nucleotidesGFF5367 and GFF5368 overlap by 4 nucleotides GFF5365 - Outer membrane stress sensor protease DegS, at 237,702 to 238,862 GFF5365 GFF5366 - L-Proline/Glycine betaine transporter ProP, at 239,159 to 240,511 GFF5366 GFF5367 - GTP cyclohydrolase 1 type 2 homolog YbgI, at 240,508 to 241,281 GFF5367 GFF5368 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 241,278 to 242,321 GFF5368 Position (kb) 239 240 241Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 238.516 kb on + strand, within GFF5365at 238.516 kb on + strand, within GFF5365at 238.517 kb on - strand, within GFF5365at 238.517 kb on - strand, within GFF5365at 238.517 kb on - strand, within GFF5365at 238.517 kb on - strand, within GFF5365at 238.517 kb on - strand, within GFF5365at 238.517 kb on - strand, within GFF5365at 238.517 kb on - strand, within GFF5365at 238.807 kb on + strandat 238.807 kb on + strandat 238.808 kb on - strandat 238.853 kb on + strandat 238.853 kb on + strandat 238.853 kb on + strandat 238.853 kb on + strandat 238.853 kb on + strandat 238.853 kb on + strandat 238.853 kb on + strandat 238.854 kb on - strandat 238.854 kb on - strandat 238.854 kb on - strandat 238.854 kb on - strandat 238.854 kb on - strandat 238.944 kb on + strandat 238.945 kb on - strandat 238.945 kb on - strandat 238.945 kb on - strandat 238.945 kb on - strandat 238.945 kb on - strandat 239.005 kb on - strandat 239.005 kb on - strandat 239.008 kb on - strandat 239.008 kb on - strandat 239.008 kb on - strandat 239.008 kb on - strandat 239.008 kb on - strandat 239.145 kb on + strandat 239.146 kb on - strandat 239.228 kb on + strandat 239.228 kb on + strandat 239.229 kb on - strandat 239.274 kb on - strandat 239.274 kb on - strandat 239.288 kb on + strandat 239.288 kb on + strandat 239.288 kb on + strandat 239.288 kb on + strandat 239.288 kb on + strandat 239.288 kb on + strandat 239.288 kb on + strandat 239.288 kb on + strandat 239.288 kb on + strandat 239.288 kb on + strandat 239.288 kb on + strandat 239.288 kb on + strandat 239.289 kb on - strandat 239.289 kb on - strandat 239.289 kb on - strandat 239.289 kb on - strandat 239.289 kb on - strandat 239.289 kb on - strandat 239.289 kb on - strandat 239.289 kb on - strandat 239.289 kb on - strandat 239.289 kb on - strandat 239.516 kb on + strand, within GFF5366at 239.516 kb on + strand, within GFF5366at 239.516 kb on + strand, within GFF5366at 239.516 kb on + strand, within GFF5366at 239.516 kb on + strand, within GFF5366at 239.517 kb on - strand, within GFF5366at 239.517 kb on - strand, within GFF5366at 239.517 kb on - strand, within GFF5366at 239.517 kb on - strand, within GFF5366at 239.729 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.807 kb on + strand, within GFF5366at 239.808 kb on - strand, within GFF5366at 239.808 kb on - strand, within GFF5366at 239.808 kb on - strand, within GFF5366at 239.924 kb on + strand, within GFF5366at 239.925 kb on - strand, within GFF5366at 239.925 kb on - strand, within GFF5366at 239.925 kb on - strand, within GFF5366at 239.978 kb on + strand, within GFF5366at 239.978 kb on + strand, within GFF5366at 239.979 kb on - strand, within GFF5366at 239.979 kb on - strand, within GFF5366at 239.979 kb on - strand, within GFF5366at 239.990 kb on + strand, within GFF5366at 239.990 kb on + strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 239.991 kb on - strand, within GFF5366at 240.155 kb on + strand, within GFF5366at 240.155 kb on + strand, within GFF5366at 240.164 kb on + strand, within GFF5366at 240.164 kb on + strand, within GFF5366at 240.164 kb on + strand, within GFF5366at 240.164 kb on + strand, within GFF5366at 240.165 kb on - strand, within GFF5366at 240.206 kb on + strand, within GFF5366at 240.206 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.308 kb on + strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.309 kb on - strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.320 kb on + strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.321 kb on - strand, within GFF5366at 240.395 kb on + strandat 240.395 kb on + strandat 240.395 kb on + strandat 240.396 kb on - strandat 240.396 kb on - strandat 240.578 kb on - strandat 240.799 kb on + strand, within GFF5367at 241.069 kb on + strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.070 kb on - strand, within GFF5367at 241.141 kb on + strand, within GFF5367at 241.199 kb on - strand, within GFF5367

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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238,516 + GFF5365 0.70 -2.3
238,516 + GFF5365 0.70 +0.1
238,517 - GFF5365 0.70 +0.6
238,517 - GFF5365 0.70 -1.9
238,517 - GFF5365 0.70 -1.6
238,517 - GFF5365 0.70 +0.1
238,517 - GFF5365 0.70 +0.7
238,517 - GFF5365 0.70 +0.5
238,517 - GFF5365 0.70 +2.1
238,807 + +0.0
238,807 + -1.3
238,808 - -0.2
238,853 + +1.1
238,853 + -0.1
238,853 + -0.2
238,853 + +1.9
238,853 + -1.6
238,853 + +1.6
238,853 + -1.3
238,854 - -0.6
238,854 - -0.1
238,854 - -1.4
238,854 - -0.7
238,854 - +0.6
238,944 + -1.3
238,945 - -1.2
238,945 - -1.4
238,945 - -0.9
238,945 - -0.8
238,945 - -3.4
239,005 - +0.4
239,005 - -0.3
239,008 - +0.2
239,008 - -2.3
239,008 - -2.4
239,008 - -2.0
239,008 - -2.3
239,145 + -1.0
239,146 - +0.6
239,228 + -0.4
239,228 + -1.2
239,229 - -0.7
239,274 - -1.8
239,274 - +1.8
239,288 + +1.0
239,288 + -1.3
239,288 + -0.5
239,288 + -0.9
239,288 + +1.8
239,288 + +2.1
239,288 + +0.4
239,288 + +0.0
239,288 + +2.0
239,288 + -0.8
239,288 + -0.9
239,288 + +0.8
239,289 - -1.6
239,289 - -0.3
239,289 - -2.4
239,289 - +3.0
239,289 - -0.8
239,289 - -1.9
239,289 - -0.2
239,289 - -1.2
239,289 - -1.0
239,289 - -0.7
239,516 + GFF5366 0.26 +2.1
239,516 + GFF5366 0.26 +0.5
239,516 + GFF5366 0.26 -0.1
239,516 + GFF5366 0.26 +1.9
239,516 + GFF5366 0.26 -0.6
239,517 - GFF5366 0.26 -1.0
239,517 - GFF5366 0.26 -0.0
239,517 - GFF5366 0.26 -0.9
239,517 - GFF5366 0.26 -1.5
239,729 + GFF5366 0.42 -2.4
239,807 + GFF5366 0.48 +0.6
239,807 + GFF5366 0.48 -2.9
239,807 + GFF5366 0.48 -0.3
239,807 + GFF5366 0.48 +0.2
239,807 + GFF5366 0.48 -0.8
239,807 + GFF5366 0.48 -2.9
239,807 + GFF5366 0.48 +1.9
239,808 - GFF5366 0.48 -3.1
239,808 - GFF5366 0.48 -1.0
239,808 - GFF5366 0.48 +0.5
239,924 + GFF5366 0.57 -1.7
239,925 - GFF5366 0.57 -0.5
239,925 - GFF5366 0.57 -0.9
239,925 - GFF5366 0.57 +1.1
239,978 + GFF5366 0.61 -1.6
239,978 + GFF5366 0.61 +0.3
239,979 - GFF5366 0.61 -1.9
239,979 - GFF5366 0.61 +0.5
239,979 - GFF5366 0.61 -0.2
239,990 + GFF5366 0.61 -2.4
239,990 + GFF5366 0.61 -2.2
239,991 - GFF5366 0.61 +0.1
239,991 - GFF5366 0.61 +1.7
239,991 - GFF5366 0.61 -1.6
239,991 - GFF5366 0.61 -1.2
239,991 - GFF5366 0.61 +0.6
240,155 + GFF5366 0.74 +0.3
240,155 + GFF5366 0.74 +0.5
240,164 + GFF5366 0.74 +0.7
240,164 + GFF5366 0.74 -2.2
240,164 + GFF5366 0.74 +0.9
240,164 + GFF5366 0.74 +0.1
240,165 - GFF5366 0.74 -1.4
240,206 + GFF5366 0.77 -3.4
240,206 + GFF5366 0.77 -0.5
240,308 + GFF5366 0.85 -2.3
240,308 + GFF5366 0.85 -1.0
240,308 + GFF5366 0.85 -0.9
240,308 + GFF5366 0.85 -2.3
240,308 + GFF5366 0.85 -1.9
240,308 + GFF5366 0.85 -0.2
240,309 - GFF5366 0.85 -1.8
240,309 - GFF5366 0.85 -2.2
240,309 - GFF5366 0.85 -2.3
240,309 - GFF5366 0.85 +0.0
240,309 - GFF5366 0.85 +0.6
240,320 + GFF5366 0.86 -2.2
240,320 + GFF5366 0.86 +0.7
240,320 + GFF5366 0.86 -1.3
240,320 + GFF5366 0.86 -0.7
240,320 + GFF5366 0.86 +0.8
240,320 + GFF5366 0.86 +0.0
240,321 - GFF5366 0.86 -0.4
240,321 - GFF5366 0.86 -0.9
240,321 - GFF5366 0.86 -1.7
240,321 - GFF5366 0.86 -0.2
240,321 - GFF5366 0.86 -1.0
240,395 + -1.0
240,395 + +0.6
240,395 + -1.5
240,396 - -0.9
240,396 - -1.7
240,578 - +0.9
240,799 + GFF5367 0.38 -2.9
241,069 + GFF5367 0.72 +0.2
241,070 - GFF5367 0.73 +1.1
241,070 - GFF5367 0.73 -0.9
241,070 - GFF5367 0.73 -1.9
241,070 - GFF5367 0.73 -1.0
241,070 - GFF5367 0.73 -2.9
241,141 + GFF5367 0.82 -0.3
241,199 - GFF5367 0.89 -1.7

Or see this region's nucleotide sequence