Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5285 and GFF5286 are separated by 122 nucleotides GFF5286 and GFF5287 are separated by 1 nucleotides GFF5287 and GFF5288 are separated by 13 nucleotides
GFF5285 - Fe2+-dicitrate sensor, membrane component, at 153,694 to 154,719
GFF5285
GFF5286 - Ferrichrome-iron receptor, at 154,842 to 157,322
GFF5286
GFF5287 - FIG00455092: hypothetical protein, at 157,324 to 158,043
GFF5287
GFF5288 - Uncharacterized protein PA4513, at 158,057 to 160,672
GFF5288
Position (kb) 154
155
156
157
158 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 154.015 kb on + strand, within GFF5285 at 154.015 kb on + strand, within GFF5285 at 154.015 kb on + strand, within GFF5285 at 154.016 kb on - strand, within GFF5285 at 154.016 kb on - strand, within GFF5285 at 154.016 kb on - strand, within GFF5285 at 154.072 kb on + strand, within GFF5285 at 154.073 kb on - strand, within GFF5285 at 154.556 kb on - strand, within GFF5285 at 154.709 kb on + strand at 154.709 kb on + strand at 154.777 kb on + strand at 154.791 kb on + strand at 154.983 kb on + strand at 154.983 kb on + strand at 154.983 kb on + strand at 154.983 kb on + strand at 154.984 kb on - strand at 154.984 kb on - strand at 155.106 kb on + strand, within GFF5286 at 155.106 kb on + strand, within GFF5286 at 155.106 kb on + strand, within GFF5286 at 155.106 kb on + strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.107 kb on - strand, within GFF5286 at 155.625 kb on + strand, within GFF5286 at 155.625 kb on + strand, within GFF5286 at 155.625 kb on + strand, within GFF5286 at 155.718 kb on + strand, within GFF5286 at 155.719 kb on - strand, within GFF5286 at 155.791 kb on - strand, within GFF5286 at 155.823 kb on + strand, within GFF5286 at 155.823 kb on + strand, within GFF5286 at 155.823 kb on + strand, within GFF5286 at 155.823 kb on + strand, within GFF5286 at 155.824 kb on - strand, within GFF5286 at 155.910 kb on + strand, within GFF5286 at 155.925 kb on + strand, within GFF5286 at 155.925 kb on + strand, within GFF5286 at 155.925 kb on + strand, within GFF5286 at 155.925 kb on + strand, within GFF5286 at 155.925 kb on + strand, within GFF5286 at 155.926 kb on - strand, within GFF5286 at 155.926 kb on - strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.105 kb on + strand, within GFF5286 at 156.106 kb on - strand, within GFF5286 at 156.106 kb on - strand, within GFF5286 at 156.106 kb on - strand, within GFF5286 at 156.106 kb on - strand, within GFF5286 at 156.120 kb on + strand, within GFF5286 at 156.120 kb on + strand, within GFF5286 at 156.120 kb on + strand, within GFF5286 at 156.120 kb on + strand, within GFF5286 at 156.121 kb on - strand, within GFF5286 at 156.219 kb on + strand, within GFF5286 at 156.219 kb on + strand, within GFF5286 at 156.220 kb on - strand, within GFF5286 at 156.220 kb on - strand, within GFF5286 at 156.220 kb on - strand, within GFF5286 at 156.220 kb on - strand, within GFF5286 at 156.220 kb on - strand, within GFF5286 at 156.231 kb on + strand, within GFF5286 at 156.231 kb on + strand, within GFF5286 at 156.231 kb on + strand, within GFF5286 at 156.231 kb on + strand, within GFF5286 at 156.232 kb on - strand, within GFF5286 at 156.232 kb on - strand, within GFF5286 at 156.232 kb on - strand, within GFF5286 at 156.232 kb on - strand, within GFF5286 at 156.297 kb on + strand, within GFF5286 at 156.309 kb on + strand, within GFF5286 at 156.354 kb on + strand, within GFF5286 at 156.355 kb on - strand, within GFF5286 at 156.369 kb on + strand, within GFF5286 at 156.369 kb on + strand, within GFF5286 at 156.600 kb on + strand, within GFF5286 at 156.600 kb on + strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.627 kb on + strand, within GFF5286 at 156.627 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.688 kb on - strand, within GFF5286 at 156.688 kb on - strand, within GFF5286 at 156.936 kb on + strand, within GFF5286 at 156.936 kb on + strand, within GFF5286 at 156.936 kb on + strand, within GFF5286 at 156.937 kb on - strand, within GFF5286 at 156.937 kb on - strand, within GFF5286 at 156.942 kb on + strand, within GFF5286 at 156.942 kb on + strand, within GFF5286 at 156.943 kb on - strand, within GFF5286 at 156.943 kb on - strand, within GFF5286 at 156.943 kb on - strand, within GFF5286 at 156.975 kb on + strand, within GFF5286 at 156.975 kb on + strand, within GFF5286 at 156.975 kb on + strand, within GFF5286 at 156.975 kb on + strand, within GFF5286 at 157.032 kb on + strand, within GFF5286 at 157.032 kb on + strand, within GFF5286 at 157.033 kb on - strand, within GFF5286 at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.093 kb on - strand at 157.093 kb on - strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.143 kb on + strand at 157.144 kb on - strand at 157.170 kb on + strand at 157.171 kb on - strand at 157.171 kb on - strand at 157.185 kb on + strand at 157.186 kb on - strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.242 kb on + strand at 157.242 kb on + strand at 157.263 kb on + strand at 157.263 kb on + strand at 157.263 kb on + strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.320 kb on + strand at 157.321 kb on - strand at 157.321 kb on - strand at 157.729 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.796 kb on - strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 154,015 + GFF5285 0.31 -0.9 154,015 + GFF5285 0.31 +0.6 154,015 + GFF5285 0.31 -0.0 154,016 - GFF5285 0.31 +1.3 154,016 - GFF5285 0.31 -2.7 154,016 - GFF5285 0.31 -0.4 154,072 + GFF5285 0.37 +1.1 154,073 - GFF5285 0.37 -0.0 154,556 - GFF5285 0.84 -1.3 154,709 + -2.6 154,709 + -1.8 154,777 + -1.7 154,791 + -3.4 154,983 + +0.4 154,983 + -3.3 154,983 + -1.2 154,983 + -0.4 154,984 - -0.4 154,984 - -1.3 155,106 + GFF5286 0.11 -0.0 155,106 + GFF5286 0.11 -0.4 155,106 + GFF5286 0.11 +0.4 155,106 + GFF5286 0.11 +1.1 155,107 - GFF5286 0.11 -0.3 155,107 - GFF5286 0.11 -1.2 155,107 - GFF5286 0.11 -2.6 155,107 - GFF5286 0.11 +1.4 155,107 - GFF5286 0.11 -1.0 155,107 - GFF5286 0.11 -2.0 155,107 - GFF5286 0.11 +0.1 155,107 - GFF5286 0.11 +0.5 155,107 - GFF5286 0.11 -0.4 155,107 - GFF5286 0.11 -2.7 155,625 + GFF5286 0.32 +2.1 155,625 + GFF5286 0.32 -1.4 155,625 + GFF5286 0.32 +0.1 155,718 + GFF5286 0.35 -2.0 155,719 - GFF5286 0.35 +1.6 155,791 - GFF5286 0.38 -0.7 155,823 + GFF5286 0.40 -0.4 155,823 + GFF5286 0.40 -0.4 155,823 + GFF5286 0.40 -1.6 155,823 + GFF5286 0.40 +1.3 155,824 - GFF5286 0.40 -1.3 155,910 + GFF5286 0.43 -0.6 155,925 + GFF5286 0.44 +0.2 155,925 + GFF5286 0.44 -0.1 155,925 + GFF5286 0.44 +3.9 155,925 + GFF5286 0.44 -3.5 155,925 + GFF5286 0.44 +1.4 155,926 - GFF5286 0.44 -1.3 155,926 - GFF5286 0.44 -3.9 156,105 + GFF5286 0.51 -1.7 156,105 + GFF5286 0.51 -0.1 156,105 + GFF5286 0.51 +1.4 156,105 + GFF5286 0.51 +0.7 156,105 + GFF5286 0.51 -0.2 156,105 + GFF5286 0.51 -0.4 156,105 + GFF5286 0.51 -1.0 156,105 + GFF5286 0.51 +0.4 156,106 - GFF5286 0.51 -1.9 156,106 - GFF5286 0.51 +0.6 156,106 - GFF5286 0.51 -3.4 156,106 - GFF5286 0.51 -2.7 156,120 + GFF5286 0.52 -1.9 156,120 + GFF5286 0.52 -1.7 156,120 + GFF5286 0.52 +1.3 156,120 + GFF5286 0.52 -0.5 156,121 - GFF5286 0.52 +1.0 156,219 + GFF5286 0.56 -0.1 156,219 + GFF5286 0.56 +2.6 156,220 - GFF5286 0.56 +0.6 156,220 - GFF5286 0.56 +0.2 156,220 - GFF5286 0.56 -1.6 156,220 - GFF5286 0.56 +1.5 156,220 - GFF5286 0.56 -1.4 156,231 + GFF5286 0.56 +1.1 156,231 + GFF5286 0.56 -0.2 156,231 + GFF5286 0.56 -0.4 156,231 + GFF5286 0.56 -2.0 156,232 - GFF5286 0.56 -0.4 156,232 - GFF5286 0.56 -0.7 156,232 - GFF5286 0.56 -1.7 156,232 - GFF5286 0.56 -1.7 156,297 + GFF5286 0.59 -1.5 156,309 + GFF5286 0.59 -2.2 156,354 + GFF5286 0.61 -0.8 156,355 - GFF5286 0.61 -0.5 156,369 + GFF5286 0.62 -0.4 156,369 + GFF5286 0.62 -0.4 156,600 + GFF5286 0.71 +0.1 156,600 + GFF5286 0.71 +0.7 156,601 - GFF5286 0.71 -1.7 156,601 - GFF5286 0.71 +0.2 156,601 - GFF5286 0.71 -2.4 156,601 - GFF5286 0.71 -2.4 156,601 - GFF5286 0.71 -0.7 156,601 - GFF5286 0.71 -1.4 156,627 + GFF5286 0.72 -1.8 156,627 + GFF5286 0.72 -0.1 156,636 + GFF5286 0.72 -0.9 156,636 + GFF5286 0.72 -0.4 156,636 + GFF5286 0.72 -0.2 156,636 + GFF5286 0.72 +0.2 156,636 + GFF5286 0.72 -0.2 156,636 + GFF5286 0.72 +2.1 156,636 + GFF5286 0.72 +0.6 156,637 - GFF5286 0.72 +1.1 156,637 - GFF5286 0.72 +0.8 156,637 - GFF5286 0.72 +1.1 156,637 - GFF5286 0.72 +1.1 156,637 - GFF5286 0.72 +2.0 156,637 - GFF5286 0.72 -1.4 156,688 - GFF5286 0.74 -0.1 156,688 - GFF5286 0.74 -2.4 156,936 + GFF5286 0.84 -1.3 156,936 + GFF5286 0.84 -2.6 156,936 + GFF5286 0.84 +0.8 156,937 - GFF5286 0.84 +1.8 156,937 - GFF5286 0.84 +0.8 156,942 + GFF5286 0.85 -3.2 156,942 + GFF5286 0.85 -1.0 156,943 - GFF5286 0.85 -1.3 156,943 - GFF5286 0.85 +0.5 156,943 - GFF5286 0.85 -1.7 156,975 + GFF5286 0.86 -0.7 156,975 + GFF5286 0.86 -1.6 156,975 + GFF5286 0.86 +1.3 156,975 + GFF5286 0.86 +1.1 157,032 + GFF5286 0.88 -1.3 157,032 + GFF5286 0.88 -1.3 157,033 - GFF5286 0.88 -0.1 157,092 + -3.0 157,092 + -0.0 157,092 + +1.1 157,092 + +0.1 157,092 + -1.8 157,093 - -0.2 157,093 - +0.8 157,132 + +0.6 157,132 + +0.0 157,132 + -0.5 157,132 + -0.4 157,143 + -2.4 157,144 - +2.2 157,170 + -0.2 157,171 - -0.2 157,171 - -0.5 157,185 + -0.9 157,186 - -0.5 157,239 + +0.8 157,239 + +0.4 157,239 + -0.4 157,239 + -0.3 157,239 + -0.5 157,239 + +0.2 157,240 - -0.1 157,240 - -3.7 157,240 - +0.1 157,240 - -2.3 157,240 - -0.2 157,240 - +0.4 157,240 - +0.3 157,240 - -1.6 157,240 - +1.4 157,240 - +1.5 157,240 - -2.6 157,240 - +0.6 157,240 - +1.7 157,242 + +1.2 157,242 + +2.7 157,263 + -2.1 157,263 + -0.4 157,263 + +1.3 157,264 - -0.0 157,264 - +0.1 157,264 - -3.4 157,264 - -1.1 157,320 + +0.8 157,321 - +0.5 157,321 - -0.1 157,729 + GFF5287 0.56 -1.0 157,795 + GFF5287 0.65 -2.7 157,795 + GFF5287 0.65 -1.3 157,795 + GFF5287 0.65 -1.3 157,795 + GFF5287 0.65 +0.5 157,795 + GFF5287 0.65 -1.3 157,795 + GFF5287 0.65 -1.3 157,796 - GFF5287 0.66 -1.0 157,861 + GFF5287 0.75 -1.9 157,861 + GFF5287 0.75 -2.5 157,861 + GFF5287 0.75 -1.0 157,861 + GFF5287 0.75 -2.6 157,861 + GFF5287 0.75 +0.9 157,862 - GFF5287 0.75 +1.2 157,862 - GFF5287 0.75 -0.1 157,862 - GFF5287 0.75 -2.3 157,918 + GFF5287 0.82 -1.3 157,918 + GFF5287 0.82 -0.4 157,918 + GFF5287 0.82 +0.6 157,919 - GFF5287 0.83 +4.7 157,919 - GFF5287 0.83 -2.7 157,919 - GFF5287 0.83 +0.3 157,919 - GFF5287 0.83 -0.5 157,919 - GFF5287 0.83 +1.2
Or see this region's nucleotide sequence