Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5262 and GFF5263 are separated by 0 nucleotides GFF5263 and GFF5264 overlap by 4 nucleotides
GFF5262 - Ferric iron ABC transporter, iron-binding protein, at 127,977 to 128,990
GFF5262
GFF5263 - Ferric iron ABC transporter, permease protein, at 128,991 to 131,264
GFF5263
GFF5264 - Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1), at 131,261 to 132,310
GFF5264
Position (kb) 128
129
130
131
132 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 128.097 kb on + strand, within GFF5262 at 128.097 kb on + strand, within GFF5262 at 128.098 kb on - strand, within GFF5262 at 128.098 kb on - strand, within GFF5262 at 128.105 kb on + strand, within GFF5262 at 128.106 kb on - strand, within GFF5262 at 128.259 kb on + strand, within GFF5262 at 128.259 kb on + strand, within GFF5262 at 128.259 kb on + strand, within GFF5262 at 128.259 kb on + strand, within GFF5262 at 128.259 kb on + strand, within GFF5262 at 128.259 kb on + strand, within GFF5262 at 128.259 kb on + strand, within GFF5262 at 128.259 kb on + strand, within GFF5262 at 128.259 kb on + strand, within GFF5262 at 128.260 kb on - strand, within GFF5262 at 128.260 kb on - strand, within GFF5262 at 128.260 kb on - strand, within GFF5262 at 128.260 kb on - strand, within GFF5262 at 128.322 kb on + strand, within GFF5262 at 128.322 kb on + strand, within GFF5262 at 128.322 kb on + strand, within GFF5262 at 128.323 kb on - strand, within GFF5262 at 128.323 kb on - strand, within GFF5262 at 128.340 kb on + strand, within GFF5262 at 128.340 kb on + strand, within GFF5262 at 128.341 kb on - strand, within GFF5262 at 128.364 kb on + strand, within GFF5262 at 128.364 kb on + strand, within GFF5262 at 128.364 kb on + strand, within GFF5262 at 128.364 kb on + strand, within GFF5262 at 128.364 kb on + strand, within GFF5262 at 128.364 kb on + strand, within GFF5262 at 128.365 kb on - strand, within GFF5262 at 128.365 kb on - strand, within GFF5262 at 128.365 kb on - strand, within GFF5262 at 128.365 kb on - strand, within GFF5262 at 128.365 kb on - strand, within GFF5262 at 128.436 kb on + strand, within GFF5262 at 128.437 kb on - strand, within GFF5262 at 128.437 kb on - strand, within GFF5262 at 128.484 kb on + strand, within GFF5262 at 128.484 kb on + strand, within GFF5262 at 128.484 kb on + strand, within GFF5262 at 128.484 kb on + strand, within GFF5262 at 128.485 kb on - strand, within GFF5262 at 128.485 kb on - strand, within GFF5262 at 128.485 kb on - strand, within GFF5262 at 128.485 kb on - strand, within GFF5262 at 128.538 kb on + strand, within GFF5262 at 128.538 kb on + strand, within GFF5262 at 128.571 kb on + strand, within GFF5262 at 128.571 kb on + strand, within GFF5262 at 128.571 kb on + strand, within GFF5262 at 128.572 kb on - strand, within GFF5262 at 128.572 kb on - strand, within GFF5262 at 128.775 kb on + strand, within GFF5262 at 128.775 kb on + strand, within GFF5262 at 128.776 kb on - strand, within GFF5262 at 128.776 kb on - strand, within GFF5262 at 128.904 kb on + strand at 128.904 kb on + strand at 128.904 kb on + strand at 128.905 kb on - strand at 128.905 kb on - strand at 128.905 kb on - strand at 128.910 kb on + strand at 128.911 kb on - strand at 128.911 kb on - strand at 128.919 kb on + strand at 128.919 kb on + strand at 128.919 kb on + strand at 128.920 kb on - strand at 128.988 kb on + strand at 128.988 kb on + strand at 128.989 kb on - strand at 128.989 kb on - strand at 129.099 kb on + strand at 129.100 kb on - strand at 129.100 kb on - strand at 129.117 kb on + strand at 129.118 kb on - strand at 129.118 kb on - strand at 129.142 kb on - strand at 129.225 kb on + strand, within GFF5263 at 129.954 kb on + strand, within GFF5263 at 129.954 kb on + strand, within GFF5263 at 129.954 kb on + strand, within GFF5263 at 129.954 kb on + strand, within GFF5263 at 129.955 kb on - strand, within GFF5263 at 129.955 kb on - strand, within GFF5263 at 129.955 kb on - strand, within GFF5263 at 130.254 kb on + strand, within GFF5263 at 130.255 kb on - strand, within GFF5263 at 130.350 kb on + strand, within GFF5263 at 130.351 kb on - strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.422 kb on + strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.423 kb on - strand, within GFF5263 at 130.464 kb on + strand, within GFF5263 at 130.464 kb on + strand, within GFF5263 at 130.465 kb on - strand, within GFF5263 at 130.512 kb on + strand, within GFF5263 at 130.513 kb on - strand, within GFF5263 at 130.513 kb on - strand, within GFF5263 at 130.513 kb on - strand, within GFF5263 at 130.767 kb on + strand, within GFF5263 at 130.767 kb on + strand, within GFF5263 at 130.767 kb on + strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 130.768 kb on - strand, within GFF5263 at 131.001 kb on + strand, within GFF5263 at 131.002 kb on - strand, within GFF5263 at 131.002 kb on - strand, within GFF5263 at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.079 kb on + strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.080 kb on - strand at 131.109 kb on + strand at 131.127 kb on + strand at 131.127 kb on + strand at 131.284 kb on + strand at 131.285 kb on - strand at 131.285 kb on - strand at 131.285 kb on - strand at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.522 kb on + strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.523 kb on - strand, within GFF5264 at 131.565 kb on - strand, within GFF5264 at 131.837 kb on + strand, within GFF5264 at 131.837 kb on + strand, within GFF5264 at 131.837 kb on + strand, within GFF5264 at 131.838 kb on - strand, within GFF5264 at 131.838 kb on - strand, within GFF5264 at 131.838 kb on - strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.936 kb on + strand, within GFF5264 at 131.937 kb on - strand, within GFF5264 at 131.937 kb on - strand, within GFF5264 at 131.937 kb on - strand, within GFF5264 at 132.161 kb on + strand, within GFF5264 at 132.162 kb on - strand, within GFF5264 at 132.176 kb on + strand, within GFF5264 at 132.177 kb on - strand, within GFF5264 at 132.182 kb on + strand, within GFF5264 at 132.182 kb on + strand, within GFF5264 at 132.183 kb on - strand, within GFF5264 at 132.183 kb on - strand, within GFF5264 at 132.183 kb on - strand, within GFF5264 at 132.183 kb on - strand, within GFF5264
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 128,097 + GFF5262 0.12 -2.2 128,097 + GFF5262 0.12 -0.0 128,098 - GFF5262 0.12 +1.3 128,098 - GFF5262 0.12 -2.5 128,105 + GFF5262 0.13 -0.6 128,106 - GFF5262 0.13 +0.1 128,259 + GFF5262 0.28 -1.2 128,259 + GFF5262 0.28 +0.0 128,259 + GFF5262 0.28 -1.2 128,259 + GFF5262 0.28 -0.9 128,259 + GFF5262 0.28 +0.0 128,259 + GFF5262 0.28 +2.1 128,259 + GFF5262 0.28 -0.9 128,259 + GFF5262 0.28 -0.4 128,259 + GFF5262 0.28 -2.3 128,260 - GFF5262 0.28 -1.0 128,260 - GFF5262 0.28 -2.7 128,260 - GFF5262 0.28 -1.6 128,260 - GFF5262 0.28 -1.6 128,322 + GFF5262 0.34 +2.5 128,322 + GFF5262 0.34 +0.1 128,322 + GFF5262 0.34 +1.7 128,323 - GFF5262 0.34 -0.2 128,323 - GFF5262 0.34 -3.1 128,340 + GFF5262 0.36 +0.5 128,340 + GFF5262 0.36 +2.1 128,341 - GFF5262 0.36 -0.9 128,364 + GFF5262 0.38 +2.9 128,364 + GFF5262 0.38 +0.5 128,364 + GFF5262 0.38 -0.3 128,364 + GFF5262 0.38 +1.0 128,364 + GFF5262 0.38 +2.4 128,364 + GFF5262 0.38 -2.5 128,365 - GFF5262 0.38 -0.7 128,365 - GFF5262 0.38 -0.2 128,365 - GFF5262 0.38 +1.6 128,365 - GFF5262 0.38 +0.1 128,365 - GFF5262 0.38 -0.0 128,436 + GFF5262 0.45 -0.2 128,437 - GFF5262 0.45 +0.7 128,437 - GFF5262 0.45 +0.4 128,484 + GFF5262 0.50 +1.1 128,484 + GFF5262 0.50 +2.3 128,484 + GFF5262 0.50 -0.2 128,484 + GFF5262 0.50 -0.7 128,485 - GFF5262 0.50 +0.6 128,485 - GFF5262 0.50 -0.1 128,485 - GFF5262 0.50 +0.4 128,485 - GFF5262 0.50 -0.2 128,538 + GFF5262 0.55 -3.1 128,538 + GFF5262 0.55 +0.1 128,571 + GFF5262 0.59 +0.7 128,571 + GFF5262 0.59 -1.2 128,571 + GFF5262 0.59 -1.9 128,572 - GFF5262 0.59 +0.9 128,572 - GFF5262 0.59 -0.6 128,775 + GFF5262 0.79 -1.6 128,775 + GFF5262 0.79 +0.6 128,776 - GFF5262 0.79 +2.3 128,776 - GFF5262 0.79 -0.6 128,904 + -2.0 128,904 + +0.2 128,904 + -1.1 128,905 - -1.9 128,905 - -3.4 128,905 - -0.4 128,910 + -2.2 128,911 - -0.2 128,911 - +1.4 128,919 + +1.4 128,919 + +0.2 128,919 + -0.9 128,920 - +1.1 128,988 + -2.0 128,988 + +0.3 128,989 - -0.9 128,989 - +0.3 129,099 + -2.1 129,100 - +0.5 129,100 - -1.1 129,117 + -0.0 129,118 - +1.4 129,118 - -1.2 129,142 - -2.2 129,225 + GFF5263 0.10 +0.3 129,954 + GFF5263 0.42 -0.3 129,954 + GFF5263 0.42 -1.2 129,954 + GFF5263 0.42 +0.8 129,954 + GFF5263 0.42 -0.1 129,955 - GFF5263 0.42 -0.3 129,955 - GFF5263 0.42 -1.8 129,955 - GFF5263 0.42 -0.2 130,254 + GFF5263 0.56 +1.7 130,255 - GFF5263 0.56 +0.9 130,350 + GFF5263 0.60 +0.3 130,351 - GFF5263 0.60 +1.4 130,422 + GFF5263 0.63 -0.4 130,422 + GFF5263 0.63 +0.7 130,422 + GFF5263 0.63 -0.5 130,422 + GFF5263 0.63 +0.1 130,422 + GFF5263 0.63 -0.9 130,422 + GFF5263 0.63 -0.0 130,422 + GFF5263 0.63 -0.0 130,423 - GFF5263 0.63 -0.4 130,423 - GFF5263 0.63 -0.1 130,423 - GFF5263 0.63 +0.1 130,423 - GFF5263 0.63 +1.8 130,423 - GFF5263 0.63 +1.3 130,423 - GFF5263 0.63 -0.7 130,423 - GFF5263 0.63 -0.1 130,423 - GFF5263 0.63 +2.5 130,423 - GFF5263 0.63 -0.1 130,464 + GFF5263 0.65 -1.4 130,464 + GFF5263 0.65 -1.2 130,465 - GFF5263 0.65 +1.0 130,512 + GFF5263 0.67 -0.2 130,513 - GFF5263 0.67 -0.1 130,513 - GFF5263 0.67 -3.4 130,513 - GFF5263 0.67 +2.1 130,767 + GFF5263 0.78 +1.0 130,767 + GFF5263 0.78 -0.3 130,767 + GFF5263 0.78 -3.8 130,768 - GFF5263 0.78 -0.2 130,768 - GFF5263 0.78 +1.7 130,768 - GFF5263 0.78 -0.9 130,768 - GFF5263 0.78 +0.4 130,768 - GFF5263 0.78 -0.6 130,768 - GFF5263 0.78 +0.3 130,768 - GFF5263 0.78 +0.1 130,768 - GFF5263 0.78 +1.1 131,001 + GFF5263 0.88 -1.7 131,002 - GFF5263 0.88 +0.5 131,002 - GFF5263 0.88 -0.2 131,079 + -0.7 131,079 + -3.2 131,079 + -0.9 131,079 + -0.3 131,079 + +0.5 131,079 + +1.1 131,079 + -1.4 131,079 + +1.9 131,079 + +2.2 131,079 + +0.6 131,079 + -0.4 131,080 - -1.3 131,080 - -0.1 131,080 - +0.8 131,080 - +1.0 131,080 - -1.8 131,080 - +0.6 131,080 - +0.6 131,080 - -0.6 131,080 - +1.0 131,080 - -1.4 131,109 + +0.7 131,127 + +0.4 131,127 + -3.4 131,284 + +1.4 131,285 - +0.1 131,285 - -3.9 131,285 - +0.2 131,522 + GFF5264 0.25 -0.3 131,522 + GFF5264 0.25 -1.2 131,522 + GFF5264 0.25 -0.1 131,522 + GFF5264 0.25 -2.3 131,522 + GFF5264 0.25 -1.0 131,522 + GFF5264 0.25 -0.9 131,522 + GFF5264 0.25 -0.4 131,522 + GFF5264 0.25 -0.2 131,522 + GFF5264 0.25 -0.0 131,522 + GFF5264 0.25 +0.6 131,522 + GFF5264 0.25 -0.4 131,522 + GFF5264 0.25 +1.0 131,522 + GFF5264 0.25 +0.0 131,523 - GFF5264 0.25 +0.1 131,523 - GFF5264 0.25 -1.0 131,523 - GFF5264 0.25 +1.6 131,523 - GFF5264 0.25 -0.2 131,523 - GFF5264 0.25 -3.1 131,565 - GFF5264 0.29 -1.4 131,837 + GFF5264 0.55 -2.1 131,837 + GFF5264 0.55 -0.8 131,837 + GFF5264 0.55 -0.8 131,838 - GFF5264 0.55 -1.9 131,838 - GFF5264 0.55 +0.7 131,838 - GFF5264 0.55 -0.9 131,936 + GFF5264 0.64 -0.4 131,936 + GFF5264 0.64 +0.6 131,936 + GFF5264 0.64 -0.9 131,936 + GFF5264 0.64 -1.2 131,936 + GFF5264 0.64 +0.1 131,936 + GFF5264 0.64 -1.2 131,936 + GFF5264 0.64 -1.0 131,936 + GFF5264 0.64 +0.6 131,937 - GFF5264 0.64 +1.9 131,937 - GFF5264 0.64 +0.9 131,937 - GFF5264 0.64 -0.4 132,161 + GFF5264 0.86 -1.2 132,162 - GFF5264 0.86 +1.1 132,176 + GFF5264 0.87 -0.6 132,177 - GFF5264 0.87 +1.1 132,182 + GFF5264 0.88 -0.4 132,182 + GFF5264 0.88 -1.3 132,183 - GFF5264 0.88 -2.4 132,183 - GFF5264 0.88 -2.0 132,183 - GFF5264 0.88 -1.4 132,183 - GFF5264 0.88 +0.1
Or see this region's nucleotide sequence