Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5252 and GFF5253 are separated by 1 nucleotides GFF5253 and GFF5254 are separated by 31 nucleotides
GFF5252 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 116,516 to 117,496
GFF5252
GFF5253 - Amidohydrolase family protein, at 117,498 to 118,769
GFF5253
GFF5254 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 118,801 to 120,384
GFF5254
Position (kb) 117
118
119 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 116.529 kb on + strand at 116.529 kb on + strand at 116.529 kb on + strand at 116.529 kb on + strand at 116.529 kb on + strand at 116.530 kb on - strand at 116.530 kb on - strand at 116.592 kb on + strand at 116.592 kb on + strand at 116.592 kb on + strand at 116.592 kb on + strand at 116.592 kb on + strand at 116.600 kb on + strand at 116.600 kb on + strand at 116.600 kb on + strand at 116.600 kb on + strand at 116.600 kb on + strand at 116.600 kb on + strand at 116.600 kb on + strand at 116.600 kb on + strand at 116.600 kb on + strand at 116.600 kb on + strand at 116.601 kb on - strand at 116.601 kb on - strand at 116.601 kb on - strand at 116.601 kb on - strand at 116.601 kb on - strand at 116.601 kb on - strand at 116.601 kb on - strand at 116.601 kb on - strand at 116.867 kb on + strand, within GFF5252 at 116.867 kb on + strand, within GFF5252 at 116.867 kb on + strand, within GFF5252 at 116.867 kb on + strand, within GFF5252 at 116.867 kb on + strand, within GFF5252 at 116.867 kb on + strand, within GFF5252 at 116.868 kb on - strand, within GFF5252 at 116.868 kb on - strand, within GFF5252 at 117.170 kb on + strand, within GFF5252 at 117.170 kb on + strand, within GFF5252 at 117.170 kb on + strand, within GFF5252 at 117.170 kb on + strand, within GFF5252 at 117.170 kb on + strand, within GFF5252 at 117.170 kb on + strand, within GFF5252 at 117.170 kb on + strand, within GFF5252 at 117.170 kb on + strand, within GFF5252 at 117.171 kb on - strand, within GFF5252 at 117.171 kb on - strand, within GFF5252 at 117.171 kb on - strand, within GFF5252 at 117.171 kb on - strand, within GFF5252 at 117.171 kb on - strand, within GFF5252 at 117.171 kb on - strand, within GFF5252 at 117.171 kb on - strand, within GFF5252 at 117.171 kb on - strand, within GFF5252 at 117.171 kb on - strand, within GFF5252 at 117.171 kb on - strand, within GFF5252 at 117.389 kb on + strand, within GFF5252 at 117.389 kb on + strand, within GFF5252 at 117.390 kb on - strand, within GFF5252 at 117.414 kb on - strand at 117.446 kb on + strand at 117.446 kb on + strand at 117.446 kb on + strand at 117.446 kb on + strand at 117.446 kb on + strand at 117.446 kb on + strand at 117.446 kb on + strand at 117.446 kb on + strand at 117.446 kb on + strand at 117.447 kb on - strand at 117.447 kb on - strand at 117.447 kb on - strand at 117.447 kb on - strand at 117.447 kb on - strand at 117.447 kb on - strand at 117.447 kb on - strand at 117.447 kb on - strand at 117.571 kb on - strand at 117.636 kb on + strand, within GFF5253 at 117.636 kb on + strand, within GFF5253 at 117.636 kb on + strand, within GFF5253 at 117.636 kb on + strand, within GFF5253 at 117.636 kb on + strand, within GFF5253 at 117.636 kb on + strand, within GFF5253 at 117.636 kb on + strand, within GFF5253 at 117.636 kb on + strand, within GFF5253 at 117.636 kb on + strand, within GFF5253 at 117.636 kb on + strand, within GFF5253 at 117.637 kb on - strand, within GFF5253 at 117.637 kb on - strand, within GFF5253 at 117.637 kb on - strand, within GFF5253 at 117.637 kb on - strand, within GFF5253 at 117.637 kb on - strand, within GFF5253 at 117.637 kb on - strand, within GFF5253 at 117.637 kb on - strand, within GFF5253 at 117.895 kb on - strand, within GFF5253 at 118.084 kb on - strand, within GFF5253 at 118.149 kb on + strand, within GFF5253 at 118.150 kb on - strand, within GFF5253 at 118.425 kb on + strand, within GFF5253 at 118.425 kb on + strand, within GFF5253 at 118.425 kb on + strand, within GFF5253 at 118.425 kb on + strand, within GFF5253 at 118.425 kb on + strand, within GFF5253 at 118.426 kb on - strand, within GFF5253 at 118.426 kb on - strand, within GFF5253 at 118.426 kb on - strand, within GFF5253 at 118.426 kb on - strand, within GFF5253 at 118.426 kb on - strand, within GFF5253 at 118.426 kb on - strand, within GFF5253 at 118.437 kb on + strand, within GFF5253 at 118.437 kb on + strand, within GFF5253 at 118.437 kb on + strand, within GFF5253 at 118.438 kb on - strand, within GFF5253 at 118.438 kb on - strand, within GFF5253 at 118.587 kb on + strand, within GFF5253 at 118.588 kb on - strand, within GFF5253 at 118.588 kb on - strand, within GFF5253 at 118.641 kb on + strand, within GFF5253 at 118.911 kb on - strand at 118.969 kb on + strand, within GFF5254 at 118.969 kb on + strand, within GFF5254 at 118.969 kb on + strand, within GFF5254 at 118.970 kb on - strand, within GFF5254 at 118.970 kb on - strand, within GFF5254 at 118.970 kb on - strand, within GFF5254 at 118.970 kb on - strand, within GFF5254 at 119.339 kb on - strand, within GFF5254 at 119.434 kb on + strand, within GFF5254 at 119.434 kb on + strand, within GFF5254 at 119.434 kb on + strand, within GFF5254 at 119.434 kb on + strand, within GFF5254 at 119.434 kb on + strand, within GFF5254 at 119.435 kb on - strand, within GFF5254 at 119.659 kb on + strand, within GFF5254 at 119.659 kb on + strand, within GFF5254 at 119.660 kb on - strand, within GFF5254 at 119.660 kb on - strand, within GFF5254 at 119.716 kb on + strand, within GFF5254 at 119.716 kb on + strand, within GFF5254 at 119.717 kb on - strand, within GFF5254 at 119.717 kb on - strand, within GFF5254 at 119.717 kb on - strand, within GFF5254 at 119.717 kb on - strand, within GFF5254
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 116,529 + +0.4 116,529 + -0.4 116,529 + +1.2 116,529 + +1.0 116,529 + -2.9 116,530 - +2.9 116,530 - -0.4 116,592 + -3.1 116,592 + +0.4 116,592 + -0.5 116,592 + -0.9 116,592 + +0.7 116,600 + +2.1 116,600 + +2.1 116,600 + +1.1 116,600 + -0.9 116,600 + -0.9 116,600 + -1.3 116,600 + -2.5 116,600 + -0.4 116,600 + +0.9 116,600 + -2.5 116,601 - -2.3 116,601 - -0.8 116,601 - -0.6 116,601 - +0.9 116,601 - -3.4 116,601 - -1.2 116,601 - +0.4 116,601 - -0.4 116,867 + GFF5252 0.36 -1.7 116,867 + GFF5252 0.36 -2.9 116,867 + GFF5252 0.36 +1.4 116,867 + GFF5252 0.36 +2.0 116,867 + GFF5252 0.36 +0.7 116,867 + GFF5252 0.36 +0.2 116,868 - GFF5252 0.36 +0.4 116,868 - GFF5252 0.36 -3.0 117,170 + GFF5252 0.67 +1.4 117,170 + GFF5252 0.67 +1.3 117,170 + GFF5252 0.67 -2.6 117,170 + GFF5252 0.67 -0.4 117,170 + GFF5252 0.67 +0.1 117,170 + GFF5252 0.67 -1.6 117,170 + GFF5252 0.67 -0.8 117,170 + GFF5252 0.67 -0.1 117,171 - GFF5252 0.67 -0.3 117,171 - GFF5252 0.67 -0.1 117,171 - GFF5252 0.67 +0.5 117,171 - GFF5252 0.67 -0.1 117,171 - GFF5252 0.67 +0.8 117,171 - GFF5252 0.67 -1.4 117,171 - GFF5252 0.67 -0.2 117,171 - GFF5252 0.67 -0.7 117,171 - GFF5252 0.67 -2.2 117,171 - GFF5252 0.67 +1.7 117,389 + GFF5252 0.89 +0.0 117,389 + GFF5252 0.89 -1.6 117,390 - GFF5252 0.89 +0.8 117,414 - -2.0 117,446 + -0.9 117,446 + -0.1 117,446 + +0.5 117,446 + -4.0 117,446 + -0.0 117,446 + -1.1 117,446 + -2.0 117,446 + -1.7 117,446 + +1.1 117,447 - +0.3 117,447 - -1.3 117,447 - -1.4 117,447 - -2.3 117,447 - -3.3 117,447 - -0.3 117,447 - -0.9 117,447 - -0.4 117,571 - -1.4 117,636 + GFF5253 0.11 +1.2 117,636 + GFF5253 0.11 +0.3 117,636 + GFF5253 0.11 +0.3 117,636 + GFF5253 0.11 +0.2 117,636 + GFF5253 0.11 -0.8 117,636 + GFF5253 0.11 -2.3 117,636 + GFF5253 0.11 +1.3 117,636 + GFF5253 0.11 -3.1 117,636 + GFF5253 0.11 +1.0 117,636 + GFF5253 0.11 -1.2 117,637 - GFF5253 0.11 -0.3 117,637 - GFF5253 0.11 -2.5 117,637 - GFF5253 0.11 -0.4 117,637 - GFF5253 0.11 -0.8 117,637 - GFF5253 0.11 -0.7 117,637 - GFF5253 0.11 -1.5 117,637 - GFF5253 0.11 -1.0 117,895 - GFF5253 0.31 -0.2 118,084 - GFF5253 0.46 +0.2 118,149 + GFF5253 0.51 -2.1 118,150 - GFF5253 0.51 +1.6 118,425 + GFF5253 0.73 -0.3 118,425 + GFF5253 0.73 -2.2 118,425 + GFF5253 0.73 -0.2 118,425 + GFF5253 0.73 +0.3 118,425 + GFF5253 0.73 +1.3 118,426 - GFF5253 0.73 -1.9 118,426 - GFF5253 0.73 +1.7 118,426 - GFF5253 0.73 +0.4 118,426 - GFF5253 0.73 -0.4 118,426 - GFF5253 0.73 -2.4 118,426 - GFF5253 0.73 +2.9 118,437 + GFF5253 0.74 -1.3 118,437 + GFF5253 0.74 -1.4 118,437 + GFF5253 0.74 -1.2 118,438 - GFF5253 0.74 -1.7 118,438 - GFF5253 0.74 +1.8 118,587 + GFF5253 0.86 -2.0 118,588 - GFF5253 0.86 +0.9 118,588 - GFF5253 0.86 -0.7 118,641 + GFF5253 0.90 +1.3 118,911 - +0.7 118,969 + GFF5254 0.11 +1.7 118,969 + GFF5254 0.11 +0.2 118,969 + GFF5254 0.11 +1.9 118,970 - GFF5254 0.11 -0.4 118,970 - GFF5254 0.11 +0.3 118,970 - GFF5254 0.11 +0.6 118,970 - GFF5254 0.11 +2.9 119,339 - GFF5254 0.34 +0.7 119,434 + GFF5254 0.40 -2.8 119,434 + GFF5254 0.40 -0.4 119,434 + GFF5254 0.40 +2.1 119,434 + GFF5254 0.40 -0.2 119,434 + GFF5254 0.40 -1.6 119,435 - GFF5254 0.40 +0.5 119,659 + GFF5254 0.54 -1.7 119,659 + GFF5254 0.54 -0.4 119,660 - GFF5254 0.54 -0.9 119,660 - GFF5254 0.54 -2.6 119,716 + GFF5254 0.58 -1.8 119,716 + GFF5254 0.58 +1.4 119,717 - GFF5254 0.58 +0.6 119,717 - GFF5254 0.58 -0.3 119,717 - GFF5254 0.58 +2.1 119,717 - GFF5254 0.58 -1.4
Or see this region's nucleotide sequence