Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5217 and GFF5218 are separated by 25 nucleotides GFF5218 and GFF5219 are separated by 2 nucleotides
GFF5217 - Ferric iron ABC transporter, iron-binding protein, at 80,142 to 81,176
GFF5217
GFF5218 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 81,202 to 82,281
GFF5218
GFF5219 - 2-aminoethylphosphonate ABC transporter permease protein, at 82,284 to 83,999
GFF5219
Position (kb) 81
82
83 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 80.239 kb on - strand at 80.272 kb on - strand, within GFF5217 at 80.314 kb on - strand, within GFF5217 at 80.619 kb on + strand, within GFF5217 at 80.619 kb on + strand, within GFF5217 at 80.668 kb on - strand, within GFF5217 at 80.668 kb on - strand, within GFF5217 at 80.754 kb on + strand, within GFF5217 at 80.754 kb on + strand, within GFF5217 at 80.754 kb on + strand, within GFF5217 at 80.754 kb on + strand, within GFF5217 at 80.754 kb on + strand, within GFF5217 at 80.754 kb on + strand, within GFF5217 at 80.755 kb on - strand, within GFF5217 at 80.755 kb on - strand, within GFF5217 at 80.994 kb on + strand, within GFF5217 at 80.994 kb on + strand, within GFF5217 at 80.994 kb on + strand, within GFF5217 at 81.145 kb on - strand at 81.461 kb on - strand, within GFF5218 at 81.502 kb on + strand, within GFF5218 at 81.502 kb on - strand, within GFF5218 at 81.503 kb on - strand, within GFF5218 at 81.599 kb on - strand, within GFF5218 at 81.875 kb on - strand, within GFF5218 at 82.581 kb on + strand, within GFF5219 at 82.587 kb on + strand, within GFF5219 at 82.588 kb on - strand, within GFF5219 at 82.588 kb on - strand, within GFF5219 at 82.849 kb on - strand, within GFF5219 at 83.025 kb on + strand, within GFF5219 at 83.025 kb on + strand, within GFF5219 at 83.026 kb on - strand, within GFF5219 at 83.026 kb on - strand, within GFF5219 at 83.026 kb on - strand, within GFF5219 at 83.026 kb on - strand, within GFF5219
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 80,239 - +0.3 80,272 - GFF5217 0.13 -1.3 80,314 - GFF5217 0.17 +1.4 80,619 + GFF5217 0.46 +0.6 80,619 + GFF5217 0.46 +3.1 80,668 - GFF5217 0.51 -0.9 80,668 - GFF5217 0.51 +1.4 80,754 + GFF5217 0.59 +0.2 80,754 + GFF5217 0.59 -0.3 80,754 + GFF5217 0.59 -0.3 80,754 + GFF5217 0.59 -0.2 80,754 + GFF5217 0.59 +1.2 80,754 + GFF5217 0.59 +2.1 80,755 - GFF5217 0.59 -1.8 80,755 - GFF5217 0.59 -1.2 80,994 + GFF5217 0.82 -2.3 80,994 + GFF5217 0.82 -1.0 80,994 + GFF5217 0.82 +1.1 81,145 - +1.3 81,461 - GFF5218 0.24 -1.3 81,502 + GFF5218 0.28 -2.5 81,502 - GFF5218 0.28 -1.8 81,503 - GFF5218 0.28 -0.5 81,599 - GFF5218 0.37 +2.1 81,875 - GFF5218 0.62 -1.6 82,581 + GFF5219 0.17 -0.8 82,587 + GFF5219 0.18 +1.1 82,588 - GFF5219 0.18 -2.7 82,588 - GFF5219 0.18 -1.9 82,849 - GFF5219 0.33 -1.6 83,025 + GFF5219 0.43 -0.5 83,025 + GFF5219 0.43 -0.0 83,026 - GFF5219 0.43 -2.6 83,026 - GFF5219 0.43 +1.6 83,026 - GFF5219 0.43 +1.3 83,026 - GFF5219 0.43 -2.3
Or see this region's nucleotide sequence