Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF520 and GFF521 overlap by 4 nucleotides GFF521 and GFF522 are separated by 20 nucleotides
GFF520 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 559,342 to 560,868
GFF520
GFF521 - Secretion protein HlyD precursor, at 560,865 to 562,001
GFF521
GFF522 - RND efflux system, inner membrane transporter, at 562,022 to 565,138
GFF522
Position (kb) 560
561
562
563 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 559.918 kb on + strand, within GFF520 at 559.918 kb on + strand, within GFF520 at 560.260 kb on + strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.261 kb on - strand, within GFF520 at 560.366 kb on - strand, within GFF520 at 560.485 kb on + strand, within GFF520 at 560.486 kb on - strand, within GFF520 at 560.486 kb on - strand, within GFF520 at 560.506 kb on + strand, within GFF520 at 560.507 kb on - strand, within GFF520 at 560.507 kb on - strand, within GFF520 at 560.507 kb on - strand, within GFF520 at 560.611 kb on + strand, within GFF520 at 560.611 kb on + strand, within GFF520 at 560.612 kb on - strand, within GFF520 at 560.612 kb on - strand, within GFF520 at 560.612 kb on - strand, within GFF520 at 560.612 kb on - strand, within GFF520 at 560.644 kb on + strand, within GFF520 at 560.645 kb on - strand, within GFF520 at 560.761 kb on + strand at 561.163 kb on + strand, within GFF521 at 561.163 kb on + strand, within GFF521 at 561.164 kb on - strand, within GFF521 at 561.164 kb on - strand, within GFF521 at 561.164 kb on - strand, within GFF521 at 561.324 kb on + strand, within GFF521 at 561.325 kb on - strand, within GFF521 at 561.325 kb on - strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.669 kb on + strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.670 kb on - strand, within GFF521 at 561.999 kb on + strand at 561.999 kb on + strand at 562.000 kb on - strand at 562.000 kb on - strand at 562.044 kb on + strand at 562.044 kb on + strand at 562.487 kb on + strand, within GFF522 at 562.487 kb on + strand, within GFF522 at 562.487 kb on + strand, within GFF522 at 562.487 kb on + strand, within GFF522 at 562.487 kb on + strand, within GFF522 at 562.488 kb on - strand, within GFF522 at 562.488 kb on - strand, within GFF522 at 562.488 kb on - strand, within GFF522 at 562.488 kb on - strand, within GFF522 at 562.803 kb on + strand, within GFF522
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 559,918 + GFF520 0.38 +0.9 559,918 + GFF520 0.38 -0.9 560,260 + GFF520 0.60 +2.8 560,261 - GFF520 0.60 +1.4 560,261 - GFF520 0.60 -0.3 560,261 - GFF520 0.60 -0.6 560,261 - GFF520 0.60 -1.2 560,261 - GFF520 0.60 -0.1 560,366 - GFF520 0.67 -3.0 560,485 + GFF520 0.75 -0.5 560,486 - GFF520 0.75 -1.2 560,486 - GFF520 0.75 -0.7 560,506 + GFF520 0.76 +0.2 560,507 - GFF520 0.76 +1.3 560,507 - GFF520 0.76 +0.9 560,507 - GFF520 0.76 +0.1 560,611 + GFF520 0.83 +1.9 560,611 + GFF520 0.83 -0.0 560,612 - GFF520 0.83 -0.7 560,612 - GFF520 0.83 +0.7 560,612 - GFF520 0.83 +1.3 560,612 - GFF520 0.83 -1.6 560,644 + GFF520 0.85 -0.4 560,645 - GFF520 0.85 +0.3 560,761 + -1.5 561,163 + GFF521 0.26 +2.1 561,163 + GFF521 0.26 +0.6 561,164 - GFF521 0.26 -1.4 561,164 - GFF521 0.26 -0.7 561,164 - GFF521 0.26 -0.2 561,324 + GFF521 0.40 +0.5 561,325 - GFF521 0.40 -2.4 561,325 - GFF521 0.40 -1.5 561,669 + GFF521 0.71 -1.4 561,669 + GFF521 0.71 -1.2 561,669 + GFF521 0.71 -0.1 561,669 + GFF521 0.71 -2.1 561,669 + GFF521 0.71 +1.9 561,669 + GFF521 0.71 +0.8 561,670 - GFF521 0.71 -1.2 561,670 - GFF521 0.71 -0.9 561,670 - GFF521 0.71 -0.4 561,670 - GFF521 0.71 -2.9 561,670 - GFF521 0.71 +2.2 561,670 - GFF521 0.71 +0.2 561,670 - GFF521 0.71 +1.1 561,999 + +0.1 561,999 + -0.5 562,000 - -1.2 562,000 - -1.2 562,044 + -0.0 562,044 + +0.7 562,487 + GFF522 0.15 -1.9 562,487 + GFF522 0.15 +3.1 562,487 + GFF522 0.15 -3.9 562,487 + GFF522 0.15 -0.1 562,487 + GFF522 0.15 -0.5 562,488 - GFF522 0.15 -0.9 562,488 - GFF522 0.15 -0.7 562,488 - GFF522 0.15 -0.2 562,488 - GFF522 0.15 -1.9 562,803 + GFF522 0.25 -0.2
Or see this region's nucleotide sequence