Strain Fitness in Variovorax sp. SCN45 around GFF5078

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5077 and GFF5078 are separated by 165 nucleotidesGFF5078 and GFF5079 are separated by 8 nucleotides GFF5077 - hypothetical protein, at 180,165 to 181,655 GFF5077 GFF5078 - Uncharacterized protein CbuG_0353, at 181,821 to 182,030 GFF5078 GFF5079 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 182,039 to 182,992 GFF5079 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 180.823 kb on + strand, within GFF5077at 180.823 kb on + strand, within GFF5077at 180.823 kb on + strand, within GFF5077at 180.823 kb on + strand, within GFF5077at 180.823 kb on + strand, within GFF5077at 180.823 kb on + strand, within GFF5077at 180.823 kb on + strand, within GFF5077at 180.823 kb on + strand, within GFF5077at 180.823 kb on + strand, within GFF5077at 180.823 kb on + strand, within GFF5077at 180.823 kb on + strand, within GFF5077at 180.824 kb on - strand, within GFF5077at 180.824 kb on - strand, within GFF5077at 180.824 kb on - strand, within GFF5077at 180.824 kb on - strand, within GFF5077at 180.824 kb on - strand, within GFF5077at 180.824 kb on - strand, within GFF5077at 180.824 kb on - strand, within GFF5077at 180.824 kb on - strand, within GFF5077at 181.060 kb on + strand, within GFF5077at 181.060 kb on + strand, within GFF5077at 181.061 kb on - strand, within GFF5077at 181.061 kb on - strand, within GFF5077at 181.061 kb on - strand, within GFF5077at 181.061 kb on - strand, within GFF5077at 181.120 kb on + strand, within GFF5077at 181.279 kb on + strand, within GFF5077at 181.279 kb on + strand, within GFF5077at 181.279 kb on + strand, within GFF5077at 181.279 kb on + strand, within GFF5077at 181.279 kb on + strand, within GFF5077at 181.279 kb on + strand, within GFF5077at 181.280 kb on - strand, within GFF5077at 181.280 kb on - strand, within GFF5077at 181.697 kb on + strandat 181.697 kb on + strandat 181.697 kb on + strandat 181.698 kb on - strandat 181.698 kb on - strandat 181.698 kb on - strandat 181.698 kb on - strandat 181.735 kb on + strandat 181.735 kb on + strandat 181.735 kb on + strandat 181.736 kb on - strandat 181.736 kb on - strandat 181.736 kb on - strandat 181.736 kb on - strandat 181.736 kb on - strandat 181.736 kb on - strandat 181.736 kb on - strandat 181.862 kb on - strand, within GFF5078at 181.876 kb on + strand, within GFF5078at 181.876 kb on + strand, within GFF5078at 181.876 kb on + strand, within GFF5078at 181.915 kb on + strand, within GFF5078at 181.916 kb on - strand, within GFF5078at 181.916 kb on - strand, within GFF5078at 182.064 kb on + strandat 182.064 kb on + strandat 182.064 kb on + strandat 182.064 kb on + strandat 182.064 kb on + strandat 182.065 kb on - strandat 182.065 kb on - strandat 182.065 kb on - strandat 182.065 kb on - strandat 182.065 kb on - strandat 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.232 kb on + strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.233 kb on - strand, within GFF5079at 182.349 kb on + strand, within GFF5079at 182.349 kb on + strand, within GFF5079at 182.349 kb on + strand, within GFF5079at 182.350 kb on - strand, within GFF5079at 182.350 kb on - strand, within GFF5079at 182.350 kb on - strand, within GFF5079at 182.436 kb on + strand, within GFF5079at 182.437 kb on - strand, within GFF5079at 182.437 kb on - strand, within GFF5079at 182.437 kb on - strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.481 kb on + strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.482 kb on - strand, within GFF5079at 182.535 kb on + strand, within GFF5079at 182.535 kb on + strand, within GFF5079at 182.535 kb on + strand, within GFF5079at 182.536 kb on - strand, within GFF5079at 182.586 kb on + strand, within GFF5079at 182.587 kb on - strand, within GFF5079at 182.587 kb on - strand, within GFF5079at 182.685 kb on + strand, within GFF5079at 182.685 kb on + strand, within GFF5079at 182.686 kb on - strand, within GFF5079at 182.686 kb on - strand, within GFF5079at 182.686 kb on - strand, within GFF5079at 182.686 kb on - strand, within GFF5079at 182.760 kb on + strand, within GFF5079at 182.847 kb on + strand, within GFF5079at 182.847 kb on + strand, within GFF5079at 182.847 kb on + strand, within GFF5079at 182.847 kb on + strand, within GFF5079at 182.847 kb on + strand, within GFF5079

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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180,823 + GFF5077 0.44 -0.1
180,823 + GFF5077 0.44 -0.1
180,823 + GFF5077 0.44 -0.8
180,823 + GFF5077 0.44 -0.4
180,823 + GFF5077 0.44 +2.8
180,823 + GFF5077 0.44 +4.2
180,823 + GFF5077 0.44 +3.8
180,823 + GFF5077 0.44 +2.2
180,823 + GFF5077 0.44 -2.9
180,823 + GFF5077 0.44 +0.5
180,823 + GFF5077 0.44 -0.6
180,824 - GFF5077 0.44 -1.3
180,824 - GFF5077 0.44 +0.4
180,824 - GFF5077 0.44 -0.5
180,824 - GFF5077 0.44 -0.9
180,824 - GFF5077 0.44 +0.6
180,824 - GFF5077 0.44 -0.8
180,824 - GFF5077 0.44 +0.1
180,824 - GFF5077 0.44 -0.4
181,060 + GFF5077 0.60 +0.6
181,060 + GFF5077 0.60 +1.6
181,061 - GFF5077 0.60 -2.9
181,061 - GFF5077 0.60 -0.4
181,061 - GFF5077 0.60 +0.1
181,061 - GFF5077 0.60 +0.5
181,120 + GFF5077 0.64 -1.4
181,279 + GFF5077 0.75 +0.9
181,279 + GFF5077 0.75 -1.3
181,279 + GFF5077 0.75 +0.4
181,279 + GFF5077 0.75 -2.8
181,279 + GFF5077 0.75 +0.1
181,279 + GFF5077 0.75 -2.8
181,280 - GFF5077 0.75 -0.6
181,280 - GFF5077 0.75 -2.1
181,697 + +0.9
181,697 + +0.3
181,697 + -2.5
181,698 - -1.9
181,698 - -0.6
181,698 - +1.0
181,698 - -1.5
181,735 + +0.4
181,735 + -0.7
181,735 + -3.1
181,736 - +0.9
181,736 - +1.0
181,736 - -0.4
181,736 - +0.5
181,736 - -0.4
181,736 - +0.4
181,736 - -0.3
181,862 - GFF5078 0.20 -2.6
181,876 + GFF5078 0.26 +0.3
181,876 + GFF5078 0.26 -2.8
181,876 + GFF5078 0.26 +0.1
181,915 + GFF5078 0.45 +0.5
181,916 - GFF5078 0.45 +0.2
181,916 - GFF5078 0.45 -1.0
182,064 + -0.2
182,064 + -1.9
182,064 + +0.1
182,064 + +0.1
182,064 + -0.7
182,065 - -1.6
182,065 - -1.2
182,065 - -3.2
182,065 - +2.2
182,065 - -2.2
182,232 + GFF5079 0.20 -2.1
182,232 + GFF5079 0.20 +1.4
182,232 + GFF5079 0.20 -0.4
182,232 + GFF5079 0.20 -0.2
182,232 + GFF5079 0.20 -1.0
182,232 + GFF5079 0.20 +0.0
182,232 + GFF5079 0.20 +0.8
182,232 + GFF5079 0.20 -0.5
182,233 - GFF5079 0.20 -1.7
182,233 - GFF5079 0.20 +0.4
182,233 - GFF5079 0.20 -0.6
182,233 - GFF5079 0.20 +0.8
182,233 - GFF5079 0.20 +2.1
182,233 - GFF5079 0.20 +0.6
182,233 - GFF5079 0.20 -2.3
182,233 - GFF5079 0.20 -1.1
182,233 - GFF5079 0.20 -0.4
182,349 + GFF5079 0.32 -1.2
182,349 + GFF5079 0.32 -1.2
182,349 + GFF5079 0.32 -1.2
182,350 - GFF5079 0.33 +1.6
182,350 - GFF5079 0.33 -3.2
182,350 - GFF5079 0.33 +2.7
182,436 + GFF5079 0.42 +0.7
182,437 - GFF5079 0.42 -1.3
182,437 - GFF5079 0.42 +0.5
182,437 - GFF5079 0.42 +0.3
182,481 + GFF5079 0.46 -2.6
182,481 + GFF5079 0.46 -1.4
182,481 + GFF5079 0.46 -0.6
182,481 + GFF5079 0.46 -1.6
182,481 + GFF5079 0.46 -1.5
182,481 + GFF5079 0.46 -1.1
182,481 + GFF5079 0.46 +0.4
182,481 + GFF5079 0.46 +3.5
182,481 + GFF5079 0.46 -2.9
182,482 - GFF5079 0.46 -1.7
182,482 - GFF5079 0.46 +0.1
182,482 - GFF5079 0.46 -0.4
182,482 - GFF5079 0.46 -1.4
182,482 - GFF5079 0.46 +0.2
182,482 - GFF5079 0.46 -2.1
182,482 - GFF5079 0.46 +2.1
182,482 - GFF5079 0.46 +0.4
182,482 - GFF5079 0.46 +1.3
182,535 + GFF5079 0.52 -0.9
182,535 + GFF5079 0.52 -0.5
182,535 + GFF5079 0.52 +0.3
182,536 - GFF5079 0.52 -0.2
182,586 + GFF5079 0.57 +0.4
182,587 - GFF5079 0.57 +0.0
182,587 - GFF5079 0.57 +1.2
182,685 + GFF5079 0.68 +0.6
182,685 + GFF5079 0.68 +0.8
182,686 - GFF5079 0.68 -2.5
182,686 - GFF5079 0.68 -3.2
182,686 - GFF5079 0.68 -2.9
182,686 - GFF5079 0.68 +0.1
182,760 + GFF5079 0.76 -1.2
182,847 + GFF5079 0.85 -2.1
182,847 + GFF5079 0.85 +0.2
182,847 + GFF5079 0.85 +1.2
182,847 + GFF5079 0.85 -3.7
182,847 + GFF5079 0.85 -0.4

Or see this region's nucleotide sequence