Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4816 and GFF4817 are separated by 11 nucleotides GFF4817 and GFF4818 are separated by 57 nucleotides GFF4818 and GFF4819 are separated by 38 nucleotides GFF4819 and GFF4820 are separated by 46 nucleotides
GFF4816 - FIG01074109: hypothetical protein, at 187,529 to 188,959
GFF4816
GFF4817 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 188,971 to 189,750
GFF4817
GFF4818 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 189,808 to 190,809
GFF4818
GFF4819 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 190,848 to 191,621
GFF4819
GFF4820 - BUG/TctC family periplasmic protein, at 191,668 to 192,660
GFF4820
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 188.847 kb on + strand at 188.848 kb on - strand at 189.023 kb on + strand at 189.024 kb on - strand at 189.024 kb on - strand at 189.087 kb on - strand, within GFF4817 at 189.351 kb on - strand, within GFF4817 at 189.351 kb on - strand, within GFF4817 at 189.704 kb on + strand at 189.704 kb on + strand at 189.833 kb on + strand at 189.834 kb on - strand at 189.834 kb on - strand at 189.959 kb on + strand, within GFF4818 at 189.960 kb on - strand, within GFF4818 at 190.247 kb on + strand, within GFF4818 at 190.248 kb on - strand, within GFF4818 at 190.548 kb on - strand, within GFF4818 at 190.640 kb on + strand, within GFF4818 at 190.641 kb on - strand, within GFF4818 at 190.685 kb on + strand, within GFF4818 at 190.686 kb on - strand, within GFF4818 at 190.691 kb on + strand, within GFF4818 at 191.339 kb on - strand, within GFF4819 at 191.344 kb on + strand, within GFF4819 at 191.344 kb on + strand, within GFF4819 at 191.344 kb on + strand, within GFF4819 at 191.344 kb on + strand, within GFF4819 at 191.345 kb on - strand, within GFF4819 at 191.345 kb on - strand, within GFF4819 at 191.345 kb on - strand, within GFF4819 at 191.345 kb on - strand, within GFF4819 at 191.345 kb on - strand, within GFF4819 at 191.345 kb on - strand, within GFF4819 at 191.516 kb on - strand, within GFF4819 at 191.669 kb on + strand at 191.670 kb on - strand at 191.670 kb on - strand at 191.735 kb on + strand at 191.735 kb on + strand at 191.735 kb on + strand at 191.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 188,847 + +4.1 188,848 - -1.6 189,023 + +0.8 189,024 - -1.6 189,024 - -0.7 189,087 - GFF4817 0.15 +0.3 189,351 - GFF4817 0.49 -1.0 189,351 - GFF4817 0.49 +2.5 189,704 + -0.2 189,704 + +1.3 189,833 + +0.9 189,834 - -0.3 189,834 - -2.5 189,959 + GFF4818 0.15 -0.8 189,960 - GFF4818 0.15 -1.4 190,247 + GFF4818 0.44 +0.7 190,248 - GFF4818 0.44 +0.3 190,548 - GFF4818 0.74 -1.2 190,640 + GFF4818 0.83 -2.0 190,641 - GFF4818 0.83 +1.9 190,685 + GFF4818 0.88 -0.8 190,686 - GFF4818 0.88 +0.7 190,691 + GFF4818 0.88 -0.4 191,339 - GFF4819 0.63 +1.6 191,344 + GFF4819 0.64 +1.0 191,344 + GFF4819 0.64 -1.0 191,344 + GFF4819 0.64 +3.0 191,344 + GFF4819 0.64 -0.9 191,345 - GFF4819 0.64 +1.2 191,345 - GFF4819 0.64 +0.2 191,345 - GFF4819 0.64 -2.1 191,345 - GFF4819 0.64 -0.1 191,345 - GFF4819 0.64 -1.8 191,345 - GFF4819 0.64 -2.8 191,516 - GFF4819 0.86 +0.8 191,669 + -1.7 191,670 - -1.0 191,670 - -0.4 191,735 + -0.4 191,735 + -0.1 191,735 + +1.2 191,736 - +0.5
Or see this region's nucleotide sequence