Strain Fitness in Variovorax sp. SCN45 around GFF4725

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
85,992	-				-1.7
85,992	-				+0.8
85,992	-				+0.8
86,390	+		GFF4724	0.31	-3.0
86,391	-		GFF4724	0.31	-2.3
86,391	-		GFF4724	0.31	-1.4
86,391	-		GFF4724	0.31	-4.2
86,391	-		GFF4724	0.31	-0.2
86,391	-		GFF4724	0.31	-0.5
86,391	-		GFF4724	0.31	+0.8
86,391	-		GFF4724	0.31	-4.5
86,417	+		GFF4724	0.34	-2.6
86,417	+		GFF4724	0.34	-1.4
86,418	-		GFF4724	0.34	-4.3
86,786	+		GFF4724	0.80	-3.2
86,786	+		GFF4724	0.80	-1.9
86,786	+		GFF4724	0.80	-1.0
86,787	-		GFF4724	0.80	-2.7
87,037	+		GFF4725	0.10	-0.4
87,037	+		GFF4725	0.10	-0.5
87,037	+		GFF4725	0.10	+0.6
87,268	+		GFF4725	0.36	+0.5
87,268	+		GFF4725	0.36	-1.4
87,268	+		GFF4725	0.36	-2.0
87,269	-		GFF4725	0.36	-1.2
87,453	+		GFF4725	0.56	-2.3
87,453	+		GFF4725	0.56	-2.7
87,454	-		GFF4725	0.56	-1.4
87,454	-		GFF4725	0.56	-1.5
87,454	-		GFF4725	0.56	+0.0
87,595	+		GFF4725	0.72	-3.3
87,595	+		GFF4725	0.72	-3.1
87,596	-		GFF4725	0.72	-1.9
87,596	-		GFF4725	0.72	-0.1
87,596	-		GFF4725	0.72	-1.5
87,596	-		GFF4725	0.72	-4.1
87,835	+				-2.0
87,835	+				-0.2
87,835	+				-1.2
87,835	+				-2.5
87,835	+				-1.7
87,836	-				+0.5
87,836	-				-2.0
87,878	+				-2.7
87,879	-				+0.0
87,879	-				-0.9
87,879	-				-2.7
87,879	-				-1.2
87,900	+				+1.2
88,068	+				-0.8
88,069	-				-0.2
88,069	-				-2.6
88,069	-				+0.4
88,072	+				+0.2
88,073	-				+0.7
88,163	+				-2.2
88,164	+				-0.8
88,164	+				+1.4
88,164	+				-2.6
88,165	-				+4.1
88,165	-				-1.4
88,168	+				+0.7
88,168	+				-1.6
88,168	+				-0.1
88,168	+				+0.6
88,168	+				+0.0
88,168	+				-1.5
88,168	+				+2.0
88,169	-				-1.0
88,169	-				-0.6
88,169	-				+1.0
88,169	-				+0.6
88,169	-				-0.5
88,420	+		GFF4726	0.19	-0.0
88,674	+		GFF4726	0.29	-0.7
88,675	-		GFF4726	0.29	-3.7
88,675	-		GFF4726	0.29	+0.2
88,675	-		GFF4726	0.29	+4.1
88,726	-		GFF4726	0.32	-0.4
88,726	-		GFF4726	0.32	-1.5
88,726	-		GFF4726	0.32	-1.2
88,726	-		GFF4726	0.32	+1.0
88,840	-		GFF4726	0.36	+0.7