Strain Fitness in Variovorax sp. SCN45 around GFF4679

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
37,591	-		GFF4678	0.66	+0.9
37,806	+		GFF4678	0.75	-3.1
37,807	-		GFF4678	0.75	-1.3
37,807	-		GFF4678	0.75	-1.7
37,807	-		GFF4678	0.75	-2.1
37,807	-		GFF4678	0.75	-1.7
37,807	-		GFF4678	0.75	-0.5
37,882	-		GFF4678	0.79	-1.0
38,295	+				-0.1
38,295	+				-2.0
38,295	+				+1.6
38,295	+				-2.6
38,296	-				+1.4
38,296	-				+0.2
38,296	-				-1.9
38,296	-				-0.4
38,296	-				-3.9
38,296	-				-1.2
38,522	+		GFF4679	0.15	-0.2
38,522	+		GFF4679	0.15	-0.8
38,522	+		GFF4679	0.15	-1.7
38,523	-		GFF4679	0.15	-0.5
38,523	-		GFF4679	0.15	+0.1
38,523	-		GFF4679	0.15	-1.0
38,523	-		GFF4679	0.15	-0.4
38,627	+		GFF4679	0.25	-1.0
38,627	+		GFF4679	0.25	+1.6
38,627	+		GFF4679	0.25	-2.6
38,628	-		GFF4679	0.25	+1.6
38,628	-		GFF4679	0.25	-3.0
39,444	-				-0.6
39,444	-				-1.3
39,444	-				-1.7
39,444	-				+1.3
39,444	-				-0.5
39,445	-				-1.0
39,505	+				+0.0
39,916	+		GFF4680	0.51	-2.4
40,000	+		GFF4680	0.62	-0.7
40,000	+		GFF4680	0.62	-0.0
40,001	-		GFF4680	0.62	+1.1
40,001	-		GFF4680	0.62	-1.7
40,027	+		GFF4680	0.66	-0.4
40,120	-		GFF4680	0.78	+1.2
40,279	+				+0.7
40,297	-				+0.0
40,297	-				+0.8
40,315	-				-0.3
40,316	+				-0.2
40,316	+				+0.2
40,316	+				-1.5
40,316	+				-0.5
40,317	-				+0.2
40,317	-				-0.6
40,317	-				-0.3
40,317	-				-2.1
40,317	-				-0.7
40,317	-				-1.2
40,339	-				+1.2
40,340	+				+0.0
40,340	+				-2.5