Strain Fitness in Variovorax sp. SCN45 around GFF4644

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
102	+				-2.7
102	+				-1.0
102	+				-1.4
102	+				-1.4
103	-				+0.5
103	-				-0.4
103	-				-2.5
103	-				-1.2
103	-				-0.5
103	-				-0.2
103	-				-1.3
103	-				-0.2
103	-				-2.0
103	-				+0.3
103	-				+0.6
103	-				-0.4
103	-				+0.4
103	-				-1.7
238	-		GFF4644	0.56	-1.5
238	-		GFF4644	0.56	+2.3
238	-		GFF4644	0.56	-1.1
383	+				-2.2
384	-				-0.9
384	-				-2.4
384	-				-1.6
392	+				-0.3
428	+				+0.8
428	+				+0.9
429	-				-0.1
435	+				-1.8
435	+				-0.3
435	+				-2.0
436	-				-2.5
436	-				-2.6
436	-				+1.0
477	+				+0.2
477	+				-0.2
478	-				-3.0
478	-				+0.4
478	-				+0.3
478	-				-0.4
505	+				-0.3
505	+				-1.6
505	+				-0.3
506	-				+2.4
536	-				-0.2
600	+				-2.0
601	-				-0.2
757	+				-1.9
757	+				+0.6
757	+				-2.0
757	+				+2.1
867	+				+0.3
867	+				-3.5
867	+				+2.3
867	+				-1.2
868	-				-0.5
868	-				-0.5
868	-				-0.8
1,087	-		GFF4645	0.19	+1.6
1,176	+		GFF4645	0.24	+0.5
1,176	+		GFF4645	0.24	-2.6
1,176	+		GFF4645	0.24	+1.0
1,177	-		GFF4645	0.24	+1.5
1,177	-		GFF4645	0.24	+0.2
1,177	-		GFF4645	0.24	+1.3
1,201	-		GFF4645	0.26	+1.7