Strain Fitness in Variovorax sp. SCN45 around GFF4633

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4631 and GFF4632 are separated by 3 nucleotidesGFF4632 and GFF4633 overlap by 4 nucleotidesGFF4633 and GFF4634 are separated by 1 nucleotidesGFF4634 and GFF4635 overlap by 4 nucleotides GFF4631 - ABC transporter, at 272,804 to 273,505 GFF4631 GFF4632 - Glycosyl transferase, family 2, at 273,509 to 274,456 GFF4632 GFF4633 - no description, at 274,453 to 274,818 GFF4633 GFF4634 - Transketolase, C-terminal section (EC 2.2.1.1), at 274,820 to 275,737 GFF4634 GFF4635 - Transketolase, N-terminal section (EC 2.2.1.1), at 275,734 to 276,546 GFF4635 Position (kb) 274 275Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 273.598 kb on - strandat 273.598 kb on - strandat 273.598 kb on - strandat 273.714 kb on + strand, within GFF4632at 273.715 kb on - strand, within GFF4632at 273.715 kb on - strand, within GFF4632at 273.822 kb on + strand, within GFF4632at 273.823 kb on - strand, within GFF4632at 273.823 kb on - strand, within GFF4632at 273.831 kb on + strand, within GFF4632at 273.831 kb on + strand, within GFF4632at 273.831 kb on + strand, within GFF4632at 273.831 kb on + strand, within GFF4632at 273.831 kb on + strand, within GFF4632at 273.831 kb on + strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.832 kb on - strand, within GFF4632at 273.876 kb on + strand, within GFF4632at 273.876 kb on + strand, within GFF4632at 273.876 kb on + strand, within GFF4632at 273.877 kb on - strand, within GFF4632at 273.877 kb on - strand, within GFF4632at 273.877 kb on - strand, within GFF4632at 273.927 kb on + strand, within GFF4632at 273.979 kb on - strand, within GFF4632at 273.979 kb on - strand, within GFF4632at 273.979 kb on - strand, within GFF4632at 274.041 kb on + strand, within GFF4632at 274.042 kb on - strand, within GFF4632at 274.044 kb on + strand, within GFF4632at 274.044 kb on + strand, within GFF4632at 274.044 kb on + strand, within GFF4632at 274.044 kb on + strand, within GFF4632at 274.045 kb on - strand, within GFF4632at 274.045 kb on - strand, within GFF4632at 274.045 kb on - strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.350 kb on + strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.351 kb on - strand, within GFF4632at 274.426 kb on - strandat 274.426 kb on - strandat 274.426 kb on - strandat 274.426 kb on - strandat 274.426 kb on - strandat 274.426 kb on - strandat 274.426 kb on - strandat 274.535 kb on + strand, within GFF4633at 274.535 kb on + strand, within GFF4633at 274.536 kb on - strand, within GFF4633at 274.536 kb on - strand, within GFF4633at 274.563 kb on - strand, within GFF4633at 274.601 kb on + strand, within GFF4633at 274.601 kb on + strand, within GFF4633at 274.601 kb on + strand, within GFF4633at 274.602 kb on - strand, within GFF4633at 274.602 kb on - strand, within GFF4633at 274.602 kb on - strand, within GFF4633at 274.735 kb on + strand, within GFF4633at 274.757 kb on + strand, within GFF4633at 274.908 kb on + strandat 274.908 kb on + strandat 274.909 kb on - strandat 274.909 kb on - strandat 275.280 kb on + strand, within GFF4634at 275.280 kb on + strand, within GFF4634at 275.281 kb on - strand, within GFF4634at 275.281 kb on - strand, within GFF4634at 275.281 kb on - strand, within GFF4634at 275.359 kb on + strand, within GFF4634at 275.360 kb on - strand, within GFF4634at 275.360 kb on - strand, within GFF4634at 275.361 kb on + strand, within GFF4634at 275.361 kb on + strand, within GFF4634at 275.362 kb on - strand, within GFF4634at 275.362 kb on - strand, within GFF4634at 275.362 kb on - strand, within GFF4634at 275.386 kb on + strand, within GFF4634at 275.425 kb on - strand, within GFF4634at 275.425 kb on - strand, within GFF4634at 275.425 kb on - strand, within GFF4634at 275.473 kb on - strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.656 kb on - strandat 275.775 kb on - strandat 275.798 kb on + strandat 275.798 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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273,598 - -3.5
273,598 - +0.9
273,598 - -2.1
273,714 + GFF4632 0.22 -1.8
273,715 - GFF4632 0.22 -0.9
273,715 - GFF4632 0.22 -1.7
273,822 + GFF4632 0.33 -2.0
273,823 - GFF4632 0.33 +0.5
273,823 - GFF4632 0.33 -0.7
273,831 + GFF4632 0.34 -0.1
273,831 + GFF4632 0.34 -0.4
273,831 + GFF4632 0.34 -0.8
273,831 + GFF4632 0.34 +1.6
273,831 + GFF4632 0.34 -1.2
273,831 + GFF4632 0.34 +3.4
273,832 - GFF4632 0.34 -2.8
273,832 - GFF4632 0.34 -1.9
273,832 - GFF4632 0.34 -2.2
273,832 - GFF4632 0.34 +2.2
273,832 - GFF4632 0.34 -2.7
273,832 - GFF4632 0.34 -2.8
273,832 - GFF4632 0.34 -2.4
273,832 - GFF4632 0.34 +0.2
273,832 - GFF4632 0.34 -1.2
273,832 - GFF4632 0.34 +0.4
273,876 + GFF4632 0.39 -1.1
273,876 + GFF4632 0.39 +0.2
273,876 + GFF4632 0.39 -1.7
273,877 - GFF4632 0.39 +0.5
273,877 - GFF4632 0.39 -0.1
273,877 - GFF4632 0.39 -2.0
273,927 + GFF4632 0.44 -0.4
273,979 - GFF4632 0.50 -0.5
273,979 - GFF4632 0.50 -2.5
273,979 - GFF4632 0.50 -1.3
274,041 + GFF4632 0.56 -3.7
274,042 - GFF4632 0.56 +0.1
274,044 + GFF4632 0.56 -1.2
274,044 + GFF4632 0.56 -1.6
274,044 + GFF4632 0.56 -0.4
274,044 + GFF4632 0.56 -1.6
274,045 - GFF4632 0.57 -1.2
274,045 - GFF4632 0.57 -0.2
274,045 - GFF4632 0.57 -1.2
274,350 + GFF4632 0.89 +0.6
274,350 + GFF4632 0.89 -3.6
274,350 + GFF4632 0.89 +0.5
274,350 + GFF4632 0.89 -1.7
274,350 + GFF4632 0.89 -2.4
274,350 + GFF4632 0.89 -0.0
274,350 + GFF4632 0.89 -1.1
274,351 - GFF4632 0.89 +0.1
274,351 - GFF4632 0.89 -1.1
274,351 - GFF4632 0.89 -0.1
274,351 - GFF4632 0.89 -1.1
274,351 - GFF4632 0.89 -1.7
274,351 - GFF4632 0.89 -2.8
274,351 - GFF4632 0.89 +1.3
274,351 - GFF4632 0.89 +0.2
274,426 - -0.6
274,426 - -1.4
274,426 - -0.7
274,426 - -2.5
274,426 - +4.7
274,426 - -3.2
274,426 - -1.3
274,535 + GFF4633 0.22 -2.2
274,535 + GFF4633 0.22 +0.2
274,536 - GFF4633 0.23 -0.2
274,536 - GFF4633 0.23 -2.2
274,563 - GFF4633 0.30 -0.4
274,601 + GFF4633 0.40 -2.5
274,601 + GFF4633 0.40 -0.4
274,601 + GFF4633 0.40 +1.1
274,602 - GFF4633 0.41 +0.6
274,602 - GFF4633 0.41 +0.7
274,602 - GFF4633 0.41 +2.3
274,735 + GFF4633 0.77 -0.2
274,757 + GFF4633 0.83 +0.4
274,908 + -2.3
274,908 + -2.8
274,909 - -1.6
274,909 - -1.7
275,280 + GFF4634 0.50 -0.1
275,280 + GFF4634 0.50 -1.4
275,281 - GFF4634 0.50 -2.6
275,281 - GFF4634 0.50 +0.2
275,281 - GFF4634 0.50 -2.0
275,359 + GFF4634 0.59 -2.1
275,360 - GFF4634 0.59 -1.7
275,360 - GFF4634 0.59 -2.2
275,361 + GFF4634 0.59 +2.2
275,361 + GFF4634 0.59 -2.0
275,362 - GFF4634 0.59 -3.8
275,362 - GFF4634 0.59 -1.7
275,362 - GFF4634 0.59 +2.2
275,386 + GFF4634 0.62 -2.4
275,425 - GFF4634 0.66 -1.4
275,425 - GFF4634 0.66 +1.5
275,425 - GFF4634 0.66 -1.7
275,473 - GFF4634 0.71 -1.5
275,613 + GFF4634 0.86 +1.2
275,613 + GFF4634 0.86 +0.8
275,613 + GFF4634 0.86 +0.6
275,613 + GFF4634 0.86 -1.2
275,613 + GFF4634 0.86 -0.6
275,613 + GFF4634 0.86 -1.8
275,614 - GFF4634 0.86 -4.5
275,614 - GFF4634 0.86 -1.1
275,614 - GFF4634 0.86 +0.6
275,614 - GFF4634 0.86 -2.4
275,614 - GFF4634 0.86 -2.0
275,656 - -2.6
275,775 - -1.7
275,798 + -1.5
275,798 + -1.4

Or see this region's nucleotide sequence