Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4616 and GFF4617 overlap by 4 nucleotides GFF4617 and GFF4618 are separated by 110 nucleotides GFF4618 and GFF4619 are separated by 34 nucleotides
GFF4616 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 258,190 to 258,936
GFF4616
GFF4617 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 258,933 to 259,667
GFF4617
GFF4618 - Hexuronate utilization operon transcriptional repressor ExuR, at 259,778 to 260,485
GFF4618
GFF4619 - Altronate dehydratase (EC 4.2.1.7), at 260,520 to 262,058
GFF4619
Position (kb) 259
260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 258.936 kb on + strand at 258.937 kb on - strand at 258.937 kb on - strand at 259.177 kb on + strand, within GFF4617 at 259.177 kb on + strand, within GFF4617 at 259.178 kb on - strand, within GFF4617 at 259.534 kb on + strand, within GFF4617 at 259.535 kb on - strand, within GFF4617 at 259.711 kb on - strand at 259.711 kb on - strand at 259.715 kb on + strand at 259.715 kb on + strand at 259.715 kb on - strand at 259.716 kb on - strand at 259.716 kb on - strand at 259.716 kb on - strand at 259.732 kb on - strand at 259.974 kb on + strand, within GFF4618 at 259.974 kb on + strand, within GFF4618 at 259.975 kb on - strand, within GFF4618 at 259.994 kb on + strand, within GFF4618 at 259.995 kb on - strand, within GFF4618 at 259.995 kb on - strand, within GFF4618 at 259.995 kb on - strand, within GFF4618 at 260.316 kb on - strand, within GFF4618 at 260.319 kb on - strand, within GFF4618 at 260.319 kb on - strand, within GFF4618 at 260.529 kb on + strand at 260.530 kb on - strand at 260.530 kb on - strand at 260.682 kb on + strand, within GFF4619 at 260.683 kb on - strand, within GFF4619 at 260.683 kb on - strand, within GFF4619 at 260.777 kb on + strand, within GFF4619 at 260.895 kb on + strand, within GFF4619 at 260.895 kb on + strand, within GFF4619 at 260.895 kb on + strand, within GFF4619 at 260.896 kb on - strand, within GFF4619 at 260.896 kb on - strand, within GFF4619 at 260.896 kb on - strand, within GFF4619 at 260.896 kb on - strand, within GFF4619 at 260.896 kb on - strand, within GFF4619 at 260.896 kb on - strand, within GFF4619 at 261.096 kb on + strand, within GFF4619 at 261.096 kb on + strand, within GFF4619 at 261.462 kb on + strand, within GFF4619 at 261.462 kb on + strand, within GFF4619 at 261.463 kb on - strand, within GFF4619
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 258,936 + +0.1 258,937 - -1.1 258,937 - +0.6 259,177 + GFF4617 0.33 -1.6 259,177 + GFF4617 0.33 -3.4 259,178 - GFF4617 0.33 -0.3 259,534 + GFF4617 0.82 -1.3 259,535 - GFF4617 0.82 +1.0 259,711 - -2.4 259,711 - -0.2 259,715 + -0.8 259,715 + +0.2 259,715 - -1.9 259,716 - -0.4 259,716 - +0.4 259,716 - +0.9 259,732 - -2.5 259,974 + GFF4618 0.28 -2.2 259,974 + GFF4618 0.28 +0.5 259,975 - GFF4618 0.28 -0.9 259,994 + GFF4618 0.31 +1.4 259,995 - GFF4618 0.31 -1.2 259,995 - GFF4618 0.31 -1.7 259,995 - GFF4618 0.31 -0.6 260,316 - GFF4618 0.76 -0.1 260,319 - GFF4618 0.76 -1.7 260,319 - GFF4618 0.76 -2.0 260,529 + +0.7 260,530 - -0.4 260,530 - -0.6 260,682 + GFF4619 0.11 -1.2 260,683 - GFF4619 0.11 +0.6 260,683 - GFF4619 0.11 -1.8 260,777 + GFF4619 0.17 -0.9 260,895 + GFF4619 0.24 -1.6 260,895 + GFF4619 0.24 -1.0 260,895 + GFF4619 0.24 -2.2 260,896 - GFF4619 0.24 -0.1 260,896 - GFF4619 0.24 +0.1 260,896 - GFF4619 0.24 +0.0 260,896 - GFF4619 0.24 +0.6 260,896 - GFF4619 0.24 -3.2 260,896 - GFF4619 0.24 +1.3 261,096 + GFF4619 0.37 +3.8 261,096 + GFF4619 0.37 -3.2 261,462 + GFF4619 0.61 +2.0 261,462 + GFF4619 0.61 +2.2 261,463 - GFF4619 0.61 -1.8
Or see this region's nucleotide sequence