Strain Fitness in Variovorax sp. SCN45 around GFF4598

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4597 and GFF4598 are separated by 42 nucleotidesGFF4598 and GFF4599 are separated by 41 nucleotidesGFF4599 and GFF4600 are separated by 10 nucleotides GFF4597 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 238,775 to 239,713 GFF4597 GFF4598 - Efflux ABC transporter, permease/ATP-binding protein mlr7818, at 239,756 to 241,588 GFF4598 GFF4599 - Acyl-CoA hydrolase (EC 3.1.2.20), at 241,630 to 242,055 GFF4599 GFF4600 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 242,066 to 243,241 GFF4600 Position (kb) 239 240 241 242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 238.941 kb on + strand, within GFF4597at 238.942 kb on - strand, within GFF4597at 238.942 kb on - strand, within GFF4597at 239.037 kb on + strand, within GFF4597at 239.038 kb on - strand, within GFF4597at 239.160 kb on + strand, within GFF4597at 239.161 kb on - strand, within GFF4597at 239.161 kb on - strand, within GFF4597at 239.161 kb on - strand, within GFF4597at 239.628 kb on + strandat 239.628 kb on + strandat 239.628 kb on + strandat 239.628 kb on + strandat 239.628 kb on + strandat 239.628 kb on + strandat 239.628 kb on + strandat 239.629 kb on - strandat 239.629 kb on - strandat 239.629 kb on - strandat 239.640 kb on + strandat 239.640 kb on + strandat 239.640 kb on + strandat 239.641 kb on - strandat 239.641 kb on - strandat 239.641 kb on - strandat 239.641 kb on - strandat 239.757 kb on + strandat 239.758 kb on - strandat 240.111 kb on + strand, within GFF4598at 240.213 kb on + strand, within GFF4598at 240.214 kb on - strand, within GFF4598at 240.214 kb on - strand, within GFF4598at 240.214 kb on - strand, within GFF4598at 240.339 kb on + strand, within GFF4598at 240.339 kb on + strand, within GFF4598at 240.339 kb on + strand, within GFF4598at 240.339 kb on + strand, within GFF4598at 240.349 kb on - strand, within GFF4598at 240.636 kb on + strand, within GFF4598at 240.636 kb on + strand, within GFF4598at 240.637 kb on - strand, within GFF4598at 240.637 kb on - strand, within GFF4598at 240.637 kb on - strand, within GFF4598at 240.831 kb on + strand, within GFF4598at 240.832 kb on - strand, within GFF4598at 240.864 kb on + strand, within GFF4598at 240.864 kb on + strand, within GFF4598at 240.865 kb on - strand, within GFF4598at 240.865 kb on - strand, within GFF4598at 240.865 kb on - strand, within GFF4598at 240.879 kb on + strand, within GFF4598at 240.880 kb on - strand, within GFF4598at 240.880 kb on - strand, within GFF4598at 240.987 kb on + strand, within GFF4598at 240.987 kb on + strand, within GFF4598at 240.987 kb on + strand, within GFF4598at 240.987 kb on + strand, within GFF4598at 240.987 kb on + strand, within GFF4598at 240.988 kb on - strand, within GFF4598at 240.988 kb on - strand, within GFF4598at 240.988 kb on - strand, within GFF4598at 240.988 kb on - strand, within GFF4598at 240.988 kb on - strand, within GFF4598at 240.988 kb on - strand, within GFF4598at 241.092 kb on + strand, within GFF4598at 241.093 kb on - strand, within GFF4598at 241.311 kb on + strand, within GFF4598at 241.312 kb on - strand, within GFF4598at 241.470 kb on + strandat 241.470 kb on + strandat 241.470 kb on + strandat 241.470 kb on + strandat 241.470 kb on + strandat 241.482 kb on + strandat 241.638 kb on + strandat 241.805 kb on - strand, within GFF4599at 241.888 kb on + strand, within GFF4599at 241.889 kb on - strand, within GFF4599at 241.972 kb on + strand, within GFF4599at 241.972 kb on + strand, within GFF4599at 241.972 kb on + strand, within GFF4599at 241.972 kb on + strand, within GFF4599at 241.972 kb on + strand, within GFF4599at 241.973 kb on - strand, within GFF4599at 241.973 kb on - strand, within GFF4599at 241.973 kb on - strand, within GFF4599at 241.973 kb on - strand, within GFF4599at 241.973 kb on - strand, within GFF4599at 242.002 kb on + strand, within GFF4599at 242.002 kb on + strand, within GFF4599at 242.002 kb on + strand, within GFF4599at 242.002 kb on + strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.012 kb on + strand, within GFF4599at 242.012 kb on + strand, within GFF4599at 242.013 kb on - strandat 242.013 kb on - strandat 242.151 kb on + strandat 242.152 kb on - strandat 242.152 kb on - strandat 242.152 kb on - strandat 242.152 kb on - strandat 242.332 kb on - strand, within GFF4600at 242.415 kb on + strand, within GFF4600at 242.415 kb on + strand, within GFF4600at 242.415 kb on + strand, within GFF4600at 242.416 kb on - strand, within GFF4600at 242.416 kb on - strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.467 kb on - strand, within GFF4600at 242.467 kb on - strand, within GFF4600at 242.467 kb on - strand, within GFF4600

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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238,941 + GFF4597 0.18 -0.3
238,942 - GFF4597 0.18 +1.1
238,942 - GFF4597 0.18 -0.1
239,037 + GFF4597 0.28 -0.1
239,038 - GFF4597 0.28 +1.0
239,160 + GFF4597 0.41 +1.9
239,161 - GFF4597 0.41 -2.0
239,161 - GFF4597 0.41 -0.4
239,161 - GFF4597 0.41 -2.2
239,628 + +0.1
239,628 + -0.1
239,628 + -0.8
239,628 + +1.1
239,628 + -2.2
239,628 + -0.5
239,628 + -1.2
239,629 - -2.4
239,629 - -3.7
239,629 - +1.9
239,640 + +0.2
239,640 + -0.9
239,640 + +0.1
239,641 - -1.1
239,641 - +2.1
239,641 - -1.1
239,641 - +0.2
239,757 + -0.2
239,758 - -1.0
240,111 + GFF4598 0.19 -0.1
240,213 + GFF4598 0.25 +1.1
240,214 - GFF4598 0.25 +1.8
240,214 - GFF4598 0.25 +0.1
240,214 - GFF4598 0.25 +0.1
240,339 + GFF4598 0.32 -0.3
240,339 + GFF4598 0.32 +1.9
240,339 + GFF4598 0.32 -3.8
240,339 + GFF4598 0.32 +0.0
240,349 - GFF4598 0.32 -2.5
240,636 + GFF4598 0.48 +0.6
240,636 + GFF4598 0.48 -2.4
240,637 - GFF4598 0.48 -0.6
240,637 - GFF4598 0.48 -0.0
240,637 - GFF4598 0.48 +1.6
240,831 + GFF4598 0.59 -0.1
240,832 - GFF4598 0.59 -0.6
240,864 + GFF4598 0.60 -0.0
240,864 + GFF4598 0.60 -0.3
240,865 - GFF4598 0.61 -2.1
240,865 - GFF4598 0.61 -0.6
240,865 - GFF4598 0.61 +0.3
240,879 + GFF4598 0.61 +1.9
240,880 - GFF4598 0.61 +0.2
240,880 - GFF4598 0.61 -1.0
240,987 + GFF4598 0.67 -1.1
240,987 + GFF4598 0.67 -1.1
240,987 + GFF4598 0.67 -1.4
240,987 + GFF4598 0.67 +0.5
240,987 + GFF4598 0.67 +0.1
240,988 - GFF4598 0.67 -0.1
240,988 - GFF4598 0.67 +2.2
240,988 - GFF4598 0.67 -0.1
240,988 - GFF4598 0.67 -0.6
240,988 - GFF4598 0.67 -0.6
240,988 - GFF4598 0.67 +1.8
241,092 + GFF4598 0.73 -0.9
241,093 - GFF4598 0.73 +2.2
241,311 + GFF4598 0.85 -1.8
241,312 - GFF4598 0.85 +0.3
241,470 + +0.2
241,470 + -0.2
241,470 + +0.3
241,470 + -1.2
241,470 + -2.8
241,482 + -0.7
241,638 + +0.6
241,805 - GFF4599 0.41 -0.6
241,888 + GFF4599 0.61 +0.9
241,889 - GFF4599 0.61 -0.4
241,972 + GFF4599 0.80 +0.2
241,972 + GFF4599 0.80 +0.2
241,972 + GFF4599 0.80 -3.1
241,972 + GFF4599 0.80 +1.3
241,972 + GFF4599 0.80 -0.1
241,973 - GFF4599 0.81 -1.5
241,973 - GFF4599 0.81 +1.0
241,973 - GFF4599 0.81 -1.1
241,973 - GFF4599 0.81 +0.6
241,973 - GFF4599 0.81 +1.8
242,002 + GFF4599 0.87 -2.1
242,002 + GFF4599 0.87 +0.6
242,002 + GFF4599 0.87 -0.2
242,002 + GFF4599 0.87 -2.2
242,003 - GFF4599 0.88 +0.2
242,003 - GFF4599 0.88 -0.9
242,003 - GFF4599 0.88 +1.1
242,003 - GFF4599 0.88 +0.0
242,003 - GFF4599 0.88 +2.1
242,003 - GFF4599 0.88 -1.1
242,003 - GFF4599 0.88 -0.4
242,003 - GFF4599 0.88 -3.0
242,003 - GFF4599 0.88 -1.0
242,012 + GFF4599 0.90 -1.1
242,012 + GFF4599 0.90 +1.5
242,013 - +0.6
242,013 - -0.8
242,151 + -0.6
242,152 - +0.4
242,152 - +0.6
242,152 - -2.5
242,152 - -1.9
242,332 - GFF4600 0.23 +1.2
242,415 + GFF4600 0.30 -0.2
242,415 + GFF4600 0.30 -1.9
242,415 + GFF4600 0.30 +0.3
242,416 - GFF4600 0.30 +1.4
242,416 - GFF4600 0.30 -1.6
242,466 + GFF4600 0.34 -1.2
242,466 + GFF4600 0.34 -3.1
242,466 + GFF4600 0.34 -0.2
242,466 + GFF4600 0.34 -0.6
242,466 + GFF4600 0.34 -1.5
242,466 + GFF4600 0.34 -0.5
242,466 + GFF4600 0.34 -0.5
242,466 + GFF4600 0.34 -0.3
242,467 - GFF4600 0.34 -2.5
242,467 - GFF4600 0.34 +1.0
242,467 - GFF4600 0.34 +0.0

Or see this region's nucleotide sequence