Strain Fitness in Variovorax sp. SCN45 around GFF4567

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4566 and GFF4567 are separated by 28 nucleotidesGFF4567 and GFF4568 are separated by 139 nucleotides GFF4566 - hypothetical protein, at 202,108 to 203,457 GFF4566 GFF4567 - Transcriptional regulator, LysR family, at 203,486 to 204,379 GFF4567 GFF4568 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 204,519 to 206,654 GFF4568 Position (kb) 203 204 205Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 202.522 kb on + strand, within GFF4566at 202.522 kb on + strand, within GFF4566at 202.522 kb on + strand, within GFF4566at 202.522 kb on + strand, within GFF4566at 202.522 kb on + strand, within GFF4566at 202.582 kb on + strand, within GFF4566at 202.582 kb on + strand, within GFF4566at 202.582 kb on + strand, within GFF4566at 202.582 kb on + strand, within GFF4566at 202.582 kb on + strand, within GFF4566at 202.582 kb on + strand, within GFF4566at 202.583 kb on - strand, within GFF4566at 202.583 kb on - strand, within GFF4566at 202.583 kb on - strand, within GFF4566at 202.583 kb on - strand, within GFF4566at 202.583 kb on - strand, within GFF4566at 202.618 kb on + strand, within GFF4566at 202.618 kb on + strand, within GFF4566at 202.618 kb on + strand, within GFF4566at 202.619 kb on - strand, within GFF4566at 202.619 kb on - strand, within GFF4566at 202.696 kb on + strand, within GFF4566at 202.696 kb on + strand, within GFF4566at 202.696 kb on + strand, within GFF4566at 202.696 kb on + strand, within GFF4566at 202.696 kb on + strand, within GFF4566at 202.696 kb on + strand, within GFF4566at 202.696 kb on + strand, within GFF4566at 202.696 kb on + strand, within GFF4566at 202.696 kb on + strand, within GFF4566at 202.696 kb on + strand, within GFF4566at 202.696 kb on + strand, within GFF4566at 202.696 kb on + strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.697 kb on - strand, within GFF4566at 202.717 kb on + strand, within GFF4566at 202.717 kb on + strand, within GFF4566at 202.717 kb on + strand, within GFF4566at 202.717 kb on + strand, within GFF4566at 202.717 kb on + strand, within GFF4566at 202.717 kb on + strand, within GFF4566at 202.717 kb on + strand, within GFF4566at 202.717 kb on + strand, within GFF4566at 202.717 kb on + strand, within GFF4566at 202.718 kb on - strand, within GFF4566at 202.718 kb on - strand, within GFF4566at 202.718 kb on - strand, within GFF4566at 202.718 kb on - strand, within GFF4566at 202.718 kb on - strand, within GFF4566at 202.718 kb on - strand, within GFF4566at 202.718 kb on - strand, within GFF4566at 202.790 kb on + strand, within GFF4566at 202.791 kb on - strand, within GFF4566at 202.791 kb on - strand, within GFF4566at 202.840 kb on + strand, within GFF4566at 202.840 kb on + strand, within GFF4566at 202.840 kb on + strand, within GFF4566at 202.840 kb on + strand, within GFF4566at 202.840 kb on + strand, within GFF4566at 202.840 kb on + strand, within GFF4566at 202.840 kb on + strand, within GFF4566at 202.840 kb on + strand, within GFF4566at 202.840 kb on + strand, within GFF4566at 202.841 kb on - strand, within GFF4566at 202.841 kb on - strand, within GFF4566at 202.841 kb on - strand, within GFF4566at 202.841 kb on - strand, within GFF4566at 202.841 kb on - strand, within GFF4566at 202.876 kb on + strand, within GFF4566at 202.876 kb on + strand, within GFF4566at 202.876 kb on + strand, within GFF4566at 202.877 kb on - strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.987 kb on + strand, within GFF4566at 202.988 kb on - strand, within GFF4566at 202.988 kb on - strand, within GFF4566at 202.988 kb on - strand, within GFF4566at 202.988 kb on - strand, within GFF4566at 202.988 kb on - strand, within GFF4566at 202.988 kb on - strand, within GFF4566at 203.153 kb on + strand, within GFF4566at 203.153 kb on + strand, within GFF4566at 203.153 kb on + strand, within GFF4566at 203.153 kb on + strand, within GFF4566at 203.153 kb on + strand, within GFF4566at 203.153 kb on + strand, within GFF4566at 203.154 kb on - strand, within GFF4566at 203.154 kb on - strand, within GFF4566at 203.154 kb on - strand, within GFF4566at 203.440 kb on + strandat 203.440 kb on + strandat 203.441 kb on - strandat 203.441 kb on - strandat 203.487 kb on + strandat 203.487 kb on + strandat 203.487 kb on + strandat 203.487 kb on + strandat 203.488 kb on - strandat 203.488 kb on - strandat 203.488 kb on - strandat 203.488 kb on - strandat 203.565 kb on + strandat 203.565 kb on + strandat 203.565 kb on + strandat 203.565 kb on + strandat 203.565 kb on + strandat 203.565 kb on + strandat 203.565 kb on + strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.659 kb on - strand, within GFF4567at 203.659 kb on - strand, within GFF4567at 203.659 kb on - strand, within GFF4567at 203.659 kb on - strand, within GFF4567at 203.659 kb on - strand, within GFF4567at 203.659 kb on - strand, within GFF4567at 203.772 kb on + strand, within GFF4567at 203.871 kb on + strand, within GFF4567at 203.872 kb on - strand, within GFF4567at 203.895 kb on + strand, within GFF4567at 203.895 kb on + strand, within GFF4567at 204.186 kb on + strand, within GFF4567at 204.186 kb on + strand, within GFF4567at 204.279 kb on + strand, within GFF4567at 204.279 kb on + strand, within GFF4567at 204.279 kb on + strand, within GFF4567at 204.279 kb on + strand, within GFF4567at 204.279 kb on + strand, within GFF4567at 204.279 kb on + strand, within GFF4567at 204.280 kb on - strand, within GFF4567at 204.280 kb on - strand, within GFF4567at 204.280 kb on - strand, within GFF4567at 204.280 kb on - strand, within GFF4567at 204.910 kb on + strand, within GFF4568at 204.910 kb on + strand, within GFF4568at 204.910 kb on + strand, within GFF4568at 204.910 kb on + strand, within GFF4568at 204.910 kb on + strand, within GFF4568at 204.910 kb on + strand, within GFF4568at 204.910 kb on + strand, within GFF4568at 204.911 kb on - strand, within GFF4568at 204.911 kb on - strand, within GFF4568at 205.104 kb on + strand, within GFF4568at 205.104 kb on + strand, within GFF4568at 205.105 kb on - strand, within GFF4568

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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202,522 + GFF4566 0.31 -1.5
202,522 + GFF4566 0.31 +0.3
202,522 + GFF4566 0.31 -0.4
202,522 + GFF4566 0.31 +2.2
202,522 + GFF4566 0.31 -1.9
202,582 + GFF4566 0.35 +0.6
202,582 + GFF4566 0.35 -0.6
202,582 + GFF4566 0.35 -2.7
202,582 + GFF4566 0.35 -0.8
202,582 + GFF4566 0.35 -0.2
202,582 + GFF4566 0.35 -1.9
202,583 - GFF4566 0.35 -2.1
202,583 - GFF4566 0.35 -2.2
202,583 - GFF4566 0.35 -2.2
202,583 - GFF4566 0.35 -0.8
202,583 - GFF4566 0.35 -0.1
202,618 + GFF4566 0.38 +1.2
202,618 + GFF4566 0.38 +0.9
202,618 + GFF4566 0.38 -2.1
202,619 - GFF4566 0.38 +0.4
202,619 - GFF4566 0.38 +0.5
202,696 + GFF4566 0.44 -0.4
202,696 + GFF4566 0.44 -0.4
202,696 + GFF4566 0.44 +0.9
202,696 + GFF4566 0.44 -1.4
202,696 + GFF4566 0.44 -1.2
202,696 + GFF4566 0.44 +0.6
202,696 + GFF4566 0.44 -1.4
202,696 + GFF4566 0.44 -2.6
202,696 + GFF4566 0.44 -1.2
202,696 + GFF4566 0.44 +2.2
202,696 + GFF4566 0.44 -1.9
202,696 + GFF4566 0.44 -2.6
202,697 - GFF4566 0.44 -0.1
202,697 - GFF4566 0.44 +1.3
202,697 - GFF4566 0.44 -0.5
202,697 - GFF4566 0.44 -1.5
202,697 - GFF4566 0.44 -0.8
202,697 - GFF4566 0.44 -0.9
202,697 - GFF4566 0.44 -0.7
202,697 - GFF4566 0.44 +0.2
202,697 - GFF4566 0.44 -0.6
202,697 - GFF4566 0.44 +0.6
202,697 - GFF4566 0.44 -2.1
202,697 - GFF4566 0.44 -0.5
202,697 - GFF4566 0.44 +1.0
202,717 + GFF4566 0.45 +3.0
202,717 + GFF4566 0.45 +0.7
202,717 + GFF4566 0.45 +1.3
202,717 + GFF4566 0.45 -1.7
202,717 + GFF4566 0.45 -1.7
202,717 + GFF4566 0.45 -0.4
202,717 + GFF4566 0.45 +0.5
202,717 + GFF4566 0.45 +1.2
202,717 + GFF4566 0.45 -0.5
202,718 - GFF4566 0.45 +0.3
202,718 - GFF4566 0.45 +1.1
202,718 - GFF4566 0.45 -0.9
202,718 - GFF4566 0.45 -1.8
202,718 - GFF4566 0.45 +0.6
202,718 - GFF4566 0.45 +0.4
202,718 - GFF4566 0.45 +0.6
202,790 + GFF4566 0.51 -1.5
202,791 - GFF4566 0.51 -2.8
202,791 - GFF4566 0.51 +0.2
202,840 + GFF4566 0.54 +1.6
202,840 + GFF4566 0.54 +1.9
202,840 + GFF4566 0.54 +0.0
202,840 + GFF4566 0.54 -0.0
202,840 + GFF4566 0.54 -0.0
202,840 + GFF4566 0.54 -1.5
202,840 + GFF4566 0.54 +0.6
202,840 + GFF4566 0.54 -1.8
202,840 + GFF4566 0.54 -0.8
202,841 - GFF4566 0.54 +1.6
202,841 - GFF4566 0.54 +0.1
202,841 - GFF4566 0.54 -0.6
202,841 - GFF4566 0.54 -2.1
202,841 - GFF4566 0.54 -2.1
202,876 + GFF4566 0.57 -0.3
202,876 + GFF4566 0.57 -0.0
202,876 + GFF4566 0.57 -0.3
202,877 - GFF4566 0.57 +1.7
202,987 + GFF4566 0.65 +0.2
202,987 + GFF4566 0.65 -2.6
202,987 + GFF4566 0.65 -0.4
202,987 + GFF4566 0.65 -1.5
202,987 + GFF4566 0.65 -1.4
202,987 + GFF4566 0.65 +2.0
202,987 + GFF4566 0.65 -2.3
202,987 + GFF4566 0.65 -0.8
202,987 + GFF4566 0.65 +1.1
202,987 + GFF4566 0.65 +0.2
202,987 + GFF4566 0.65 +1.5
202,987 + GFF4566 0.65 -0.2
202,987 + GFF4566 0.65 +0.7
202,987 + GFF4566 0.65 -1.4
202,987 + GFF4566 0.65 +0.2
202,987 + GFF4566 0.65 -1.8
202,987 + GFF4566 0.65 -1.6
202,988 - GFF4566 0.65 +1.1
202,988 - GFF4566 0.65 -2.9
202,988 - GFF4566 0.65 +0.1
202,988 - GFF4566 0.65 +0.6
202,988 - GFF4566 0.65 +0.8
202,988 - GFF4566 0.65 -1.9
203,153 + GFF4566 0.77 -0.6
203,153 + GFF4566 0.77 -2.7
203,153 + GFF4566 0.77 -0.9
203,153 + GFF4566 0.77 -1.1
203,153 + GFF4566 0.77 +0.6
203,153 + GFF4566 0.77 +0.7
203,154 - GFF4566 0.77 -0.4
203,154 - GFF4566 0.77 -0.4
203,154 - GFF4566 0.77 +1.5
203,440 + -2.5
203,440 + -2.6
203,441 - +1.6
203,441 - +1.0
203,487 + +1.4
203,487 + -1.0
203,487 + +2.8
203,487 + -0.8
203,488 - -0.8
203,488 - -1.2
203,488 - +3.1
203,488 - -0.7
203,565 + +2.9
203,565 + -2.6
203,565 + -2.2
203,565 + -0.6
203,565 + +0.6
203,565 + -4.4
203,565 + -0.4
203,566 - -1.7
203,566 - -3.9
203,566 - +0.7
203,566 - -2.5
203,566 - +0.8
203,566 - +0.4
203,566 - +1.0
203,566 - +1.0
203,566 - -0.8
203,566 - -0.6
203,566 - +0.6
203,566 - +0.9
203,658 + GFF4567 0.19 +0.6
203,658 + GFF4567 0.19 +1.7
203,658 + GFF4567 0.19 +1.2
203,658 + GFF4567 0.19 +0.1
203,658 + GFF4567 0.19 -0.4
203,658 + GFF4567 0.19 -0.1
203,658 + GFF4567 0.19 -2.8
203,658 + GFF4567 0.19 -0.1
203,658 + GFF4567 0.19 -3.0
203,658 + GFF4567 0.19 -1.6
203,659 - GFF4567 0.19 +0.6
203,659 - GFF4567 0.19 +1.2
203,659 - GFF4567 0.19 +1.4
203,659 - GFF4567 0.19 +0.6
203,659 - GFF4567 0.19 +0.9
203,659 - GFF4567 0.19 +0.8
203,772 + GFF4567 0.32 +2.1
203,871 + GFF4567 0.43 +1.4
203,872 - GFF4567 0.43 -0.4
203,895 + GFF4567 0.46 -2.8
203,895 + GFF4567 0.46 +2.7
204,186 + GFF4567 0.78 -0.7
204,186 + GFF4567 0.78 -1.8
204,279 + GFF4567 0.89 +2.9
204,279 + GFF4567 0.89 -0.3
204,279 + GFF4567 0.89 +0.4
204,279 + GFF4567 0.89 -0.7
204,279 + GFF4567 0.89 -2.6
204,279 + GFF4567 0.89 +1.8
204,280 - GFF4567 0.89 -0.1
204,280 - GFF4567 0.89 -0.5
204,280 - GFF4567 0.89 -1.3
204,280 - GFF4567 0.89 -0.7
204,910 + GFF4568 0.18 -0.2
204,910 + GFF4568 0.18 -1.1
204,910 + GFF4568 0.18 -1.5
204,910 + GFF4568 0.18 +1.6
204,910 + GFF4568 0.18 +2.1
204,910 + GFF4568 0.18 -1.6
204,910 + GFF4568 0.18 -0.0
204,911 - GFF4568 0.18 +4.4
204,911 - GFF4568 0.18 +1.1
205,104 + GFF4568 0.27 -1.0
205,104 + GFF4568 0.27 -1.4
205,105 - GFF4568 0.27 +2.4

Or see this region's nucleotide sequence