Strain Fitness in Variovorax sp. SCN45 around GFF4527

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4524 and GFF4526 overlap by 4 nucleotidesGFF4526 and GFF4525 overlap by 2 nucleotidesGFF4525 and GFF4527 are separated by 33 nucleotidesGFF4527 and GFF4528 are separated by 67 nucleotides GFF4524 - Uncharacterized symporter YhjB, at 163,432 to 164,907 GFF4524 GFF4526 - no description, at 164,904 to 165,119 GFF4526 GFF4525 - no description, at 165,118 to 165,261 GFF4525 GFF4527 - Transcriptional regulator, GntR family, at 165,295 to 166,077 GFF4527 GFF4528 - Permease of the drug/metabolite transporter (DMT) superfamily, at 166,145 to 167,098 GFF4528 Position (kb) 165 166 167Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 164.295 kb on - strand, within GFF4524at 164.309 kb on + strand, within GFF4524at 164.309 kb on + strand, within GFF4524at 164.309 kb on + strand, within GFF4524at 164.309 kb on + strand, within GFF4524at 164.399 kb on + strand, within GFF4524at 164.399 kb on + strand, within GFF4524at 164.399 kb on + strand, within GFF4524at 164.399 kb on + strand, within GFF4524at 164.399 kb on + strand, within GFF4524at 164.400 kb on - strand, within GFF4524at 164.400 kb on - strand, within GFF4524at 164.400 kb on - strand, within GFF4524at 164.400 kb on - strand, within GFF4524at 164.400 kb on - strand, within GFF4524at 164.400 kb on - strand, within GFF4524at 164.567 kb on + strand, within GFF4524at 164.567 kb on + strand, within GFF4524at 164.567 kb on + strand, within GFF4524at 164.567 kb on + strand, within GFF4524at 164.567 kb on + strand, within GFF4524at 164.568 kb on - strand, within GFF4524at 164.568 kb on - strand, within GFF4524at 164.568 kb on - strand, within GFF4524at 164.568 kb on - strand, within GFF4524at 164.568 kb on - strand, within GFF4524at 164.658 kb on - strand, within GFF4524at 164.684 kb on + strand, within GFF4524at 164.684 kb on + strand, within GFF4524at 164.684 kb on + strand, within GFF4524at 164.684 kb on + strand, within GFF4524at 164.685 kb on - strand, within GFF4524at 164.685 kb on - strand, within GFF4524at 164.685 kb on - strand, within GFF4524at 164.685 kb on - strand, within GFF4524at 164.685 kb on - strand, within GFF4524at 164.685 kb on - strand, within GFF4524at 164.708 kb on + strand, within GFF4524at 164.708 kb on + strand, within GFF4524at 164.709 kb on - strand, within GFF4524at 164.709 kb on - strand, within GFF4524at 165.220 kb on - strand, within GFF4525at 165.282 kb on - strandat 165.282 kb on - strandat 165.282 kb on - strandat 165.294 kb on + strandat 165.294 kb on + strandat 165.294 kb on + strandat 165.295 kb on - strandat 165.295 kb on - strandat 165.385 kb on + strand, within GFF4527at 165.385 kb on + strand, within GFF4527at 165.386 kb on - strand, within GFF4527at 165.592 kb on + strand, within GFF4527at 165.593 kb on - strand, within GFF4527at 165.796 kb on + strand, within GFF4527at 165.796 kb on + strand, within GFF4527at 165.796 kb on + strand, within GFF4527at 165.796 kb on + strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.797 kb on - strand, within GFF4527at 165.829 kb on + strand, within GFF4527at 165.829 kb on + strand, within GFF4527at 165.830 kb on - strand, within GFF4527at 165.830 kb on - strand, within GFF4527at 165.830 kb on - strand, within GFF4527at 165.830 kb on - strand, within GFF4527at 165.830 kb on - strand, within GFF4527at 165.830 kb on - strand, within GFF4527at 165.841 kb on + strand, within GFF4527at 166.247 kb on + strand, within GFF4528at 166.247 kb on + strand, within GFF4528at 166.248 kb on - strand, within GFF4528at 166.248 kb on - strand, within GFF4528at 166.248 kb on - strand, within GFF4528at 166.676 kb on + strand, within GFF4528at 166.677 kb on - strand, within GFF4528at 166.677 kb on - strand, within GFF4528at 166.880 kb on + strand, within GFF4528at 166.880 kb on + strand, within GFF4528at 166.881 kb on - strand, within GFF4528at 166.881 kb on - strand, within GFF4528at 166.881 kb on - strand, within GFF4528at 166.881 kb on - strand, within GFF4528at 166.931 kb on + strand, within GFF4528at 166.932 kb on - strand, within GFF4528

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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164,295 - GFF4524 0.58 -1.2
164,309 + GFF4524 0.59 -0.3
164,309 + GFF4524 0.59 -2.2
164,309 + GFF4524 0.59 +0.2
164,309 + GFF4524 0.59 -2.5
164,399 + GFF4524 0.66 -2.9
164,399 + GFF4524 0.66 -1.2
164,399 + GFF4524 0.66 -0.1
164,399 + GFF4524 0.66 +0.4
164,399 + GFF4524 0.66 +0.1
164,400 - GFF4524 0.66 +0.8
164,400 - GFF4524 0.66 -2.4
164,400 - GFF4524 0.66 -2.4
164,400 - GFF4524 0.66 +2.2
164,400 - GFF4524 0.66 -0.8
164,400 - GFF4524 0.66 -2.1
164,567 + GFF4524 0.77 +1.1
164,567 + GFF4524 0.77 -1.1
164,567 + GFF4524 0.77 +1.4
164,567 + GFF4524 0.77 -2.9
164,567 + GFF4524 0.77 +1.0
164,568 - GFF4524 0.77 +0.9
164,568 - GFF4524 0.77 -0.1
164,568 - GFF4524 0.77 -0.9
164,568 - GFF4524 0.77 +0.6
164,568 - GFF4524 0.77 -0.9
164,658 - GFF4524 0.83 +2.2
164,684 + GFF4524 0.85 +0.6
164,684 + GFF4524 0.85 +0.2
164,684 + GFF4524 0.85 -0.4
164,684 + GFF4524 0.85 +0.5
164,685 - GFF4524 0.85 -0.1
164,685 - GFF4524 0.85 -2.1
164,685 - GFF4524 0.85 +0.4
164,685 - GFF4524 0.85 +2.5
164,685 - GFF4524 0.85 +0.2
164,685 - GFF4524 0.85 -4.0
164,708 + GFF4524 0.86 -0.6
164,708 + GFF4524 0.86 -0.6
164,709 - GFF4524 0.87 -0.1
164,709 - GFF4524 0.87 -1.4
165,220 - GFF4525 0.71 -0.6
165,282 - -2.9
165,282 - +0.2
165,282 - +0.4
165,294 + +1.5
165,294 + +0.3
165,294 + -1.5
165,295 - +0.8
165,295 - -0.1
165,385 + GFF4527 0.11 +0.2
165,385 + GFF4527 0.11 -1.2
165,386 - GFF4527 0.12 -0.5
165,592 + GFF4527 0.38 -0.7
165,593 - GFF4527 0.38 -3.2
165,796 + GFF4527 0.64 -0.3
165,796 + GFF4527 0.64 -0.3
165,796 + GFF4527 0.64 -1.4
165,796 + GFF4527 0.64 -1.1
165,797 - GFF4527 0.64 -2.2
165,797 - GFF4527 0.64 +1.1
165,797 - GFF4527 0.64 -2.2
165,797 - GFF4527 0.64 -2.0
165,797 - GFF4527 0.64 -0.9
165,797 - GFF4527 0.64 +1.1
165,797 - GFF4527 0.64 -1.3
165,829 + GFF4527 0.68 -1.3
165,829 + GFF4527 0.68 -0.9
165,830 - GFF4527 0.68 -0.2
165,830 - GFF4527 0.68 -2.1
165,830 - GFF4527 0.68 -1.1
165,830 - GFF4527 0.68 -1.9
165,830 - GFF4527 0.68 -0.0
165,830 - GFF4527 0.68 -2.7
165,841 + GFF4527 0.70 +2.2
166,247 + GFF4528 0.11 -0.7
166,247 + GFF4528 0.11 +0.5
166,248 - GFF4528 0.11 -1.3
166,248 - GFF4528 0.11 +0.2
166,248 - GFF4528 0.11 +0.6
166,676 + GFF4528 0.56 -0.1
166,677 - GFF4528 0.56 -0.2
166,677 - GFF4528 0.56 +0.2
166,880 + GFF4528 0.77 -2.4
166,880 + GFF4528 0.77 -1.2
166,881 - GFF4528 0.77 -2.3
166,881 - GFF4528 0.77 -1.9
166,881 - GFF4528 0.77 +0.4
166,881 - GFF4528 0.77 -1.4
166,931 + GFF4528 0.82 -0.0
166,932 - GFF4528 0.82 +1.5

Or see this region's nucleotide sequence