Strain Fitness in Variovorax sp. SCN45 around GFF4327

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4326 and GFF4327 are separated by 43 nucleotidesGFF4327 and GFF4328 are separated by 47 nucleotides GFF4326 - Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1), at 247,864 to 249,090 GFF4326 GFF4327 - Enoyl-CoA hydratase (EC 4.2.1.17), at 249,134 to 249,931 GFF4327 GFF4328 - hypothetical protein, at 249,979 to 251,094 GFF4328 Position (kb) 249 250Strain fitness (log2 ratio) -2 -1 0 1at 248.347 kb on + strand, within GFF4326at 248.348 kb on - strand, within GFF4326at 248.348 kb on - strand, within GFF4326at 248.527 kb on + strand, within GFF4326at 248.527 kb on + strand, within GFF4326at 248.528 kb on - strand, within GFF4326at 250.010 kb on + strandat 250.157 kb on + strand, within GFF4328at 250.158 kb on - strand, within GFF4328at 250.226 kb on + strand, within GFF4328at 250.416 kb on - strand, within GFF4328at 250.508 kb on + strand, within GFF4328

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
248,347 + GFF4326 0.39 +0.1
248,348 - GFF4326 0.39 -0.7
248,348 - GFF4326 0.39 +1.2
248,527 + GFF4326 0.54 +0.3
248,527 + GFF4326 0.54 +1.0
248,528 - GFF4326 0.54 +0.1
250,010 + -0.7
250,157 + GFF4328 0.16 +0.1
250,158 - GFF4328 0.16 +0.6
250,226 + GFF4328 0.22 -2.1
250,416 - GFF4328 0.39 -1.5
250,508 + GFF4328 0.47 +0.4

Or see this region's nucleotide sequence