Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4316 and GFF4317 are separated by 4 nucleotides GFF4317 and GFF4318 are separated by 21 nucleotides
GFF4316 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 236,525 to 238,327
GFF4316
GFF4317 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 238,332 to 239,210
GFF4317
GFF4318 - no description, at 239,232 to 240,428
GFF4318
Position (kb) 238
239
240 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 237.615 kb on + strand, within GFF4316 at 237.616 kb on - strand, within GFF4316 at 237.810 kb on + strand, within GFF4316 at 237.810 kb on + strand, within GFF4316 at 237.810 kb on + strand, within GFF4316 at 237.811 kb on - strand, within GFF4316 at 238.080 kb on + strand, within GFF4316 at 238.080 kb on + strand, within GFF4316 at 238.081 kb on - strand, within GFF4316 at 238.333 kb on + strand at 238.786 kb on + strand, within GFF4317 at 239.164 kb on + strand at 239.453 kb on - strand, within GFF4318 at 239.459 kb on - strand, within GFF4318 at 239.459 kb on - strand, within GFF4318 at 239.579 kb on + strand, within GFF4318 at 239.593 kb on + strand, within GFF4318 at 239.779 kb on + strand, within GFF4318 at 239.779 kb on + strand, within GFF4318 at 239.810 kb on - strand, within GFF4318 at 239.977 kb on + strand, within GFF4318 at 239.977 kb on + strand, within GFF4318 at 240.001 kb on + strand, within GFF4318
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 237,615 + GFF4316 0.60 +3.6 237,616 - GFF4316 0.61 -1.7 237,810 + GFF4316 0.71 -2.4 237,810 + GFF4316 0.71 +0.1 237,810 + GFF4316 0.71 +0.3 237,811 - GFF4316 0.71 -0.1 238,080 + GFF4316 0.86 -2.6 238,080 + GFF4316 0.86 -0.7 238,081 - GFF4316 0.86 +0.2 238,333 + -0.6 238,786 + GFF4317 0.52 -1.0 239,164 + -1.1 239,453 - GFF4318 0.18 -1.1 239,459 - GFF4318 0.19 +1.0 239,459 - GFF4318 0.19 -1.0 239,579 + GFF4318 0.29 +0.3 239,593 + GFF4318 0.30 -1.3 239,779 + GFF4318 0.46 +1.2 239,779 + GFF4318 0.46 -0.9 239,810 - GFF4318 0.48 +1.0 239,977 + GFF4318 0.62 -0.5 239,977 + GFF4318 0.62 -1.5 240,001 + GFF4318 0.64 -1.6
Or see this region's nucleotide sequence