Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4289 and GFF4290 overlap by 1 nucleotides GFF4290 and GFF4291 are separated by 111 nucleotides GFF4291 and GFF4292 are separated by 6 nucleotides GFF4292 and GFF4293 overlap by 4 nucleotides
GFF4289 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 209,701 to 210,594
GFF4289
GFF4290 - MaoC-like dehydratase, at 210,594 to 211,052
GFF4290
GFF4291 - Putative oxidoreductase YncB, at 211,164 to 212,189
GFF4291
GFF4292 - no description, at 212,196 to 212,675
GFF4292
GFF4293 - 4-hydroxybutyrate coenzyme A transferase, at 212,672 to 213,916
GFF4293
Position (kb) 211
212
213 Strain fitness (log2 ratio) -1
0
1
2 at 210.903 kb on - strand, within GFF4290 at 210.913 kb on + strand, within GFF4290 at 210.913 kb on + strand, within GFF4290 at 210.914 kb on - strand, within GFF4290 at 210.996 kb on + strand, within GFF4290 at 211.305 kb on + strand, within GFF4291 at 211.305 kb on + strand, within GFF4291 at 211.306 kb on - strand, within GFF4291 at 211.306 kb on - strand, within GFF4291 at 211.834 kb on - strand, within GFF4291 at 211.837 kb on - strand, within GFF4291 at 212.458 kb on + strand, within GFF4292
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 210,903 - GFF4290 0.67 -0.6 210,913 + GFF4290 0.69 -0.2 210,913 + GFF4290 0.69 +2.1 210,914 - GFF4290 0.70 +0.6 210,996 + GFF4290 0.88 +0.1 211,305 + GFF4291 0.14 +0.5 211,305 + GFF4291 0.14 -1.5 211,306 - GFF4291 0.14 -1.0 211,306 - GFF4291 0.14 -1.6 211,834 - GFF4291 0.65 -1.4 211,837 - GFF4291 0.66 -0.8 212,458 + GFF4292 0.55 -1.1
Or see this region's nucleotide sequence