Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4279 and GFF4280 are separated by 34 nucleotides GFF4280 and GFF4281 are separated by 136 nucleotides
GFF4279 - 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-), at 198,441 to 199,808
GFF4279
GFF4280 - oxidoreductase FAD/NAD(P)-binding domain protein, at 199,843 to 200,838
GFF4280
GFF4281 - Transcriptional regulator, IclR family, at 200,975 to 201,742
GFF4281
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 198.955 kb on + strand, within GFF4279 at 198.955 kb on + strand, within GFF4279 at 198.956 kb on - strand, within GFF4279 at 198.982 kb on + strand, within GFF4279 at 198.983 kb on - strand, within GFF4279 at 199.162 kb on + strand, within GFF4279 at 199.162 kb on + strand, within GFF4279 at 199.163 kb on - strand, within GFF4279 at 199.163 kb on - strand, within GFF4279 at 199.163 kb on - strand, within GFF4279 at 199.309 kb on + strand, within GFF4279 at 199.310 kb on - strand, within GFF4279 at 199.363 kb on + strand, within GFF4279 at 199.363 kb on + strand, within GFF4279 at 199.363 kb on + strand, within GFF4279 at 199.363 kb on + strand, within GFF4279 at 199.364 kb on - strand, within GFF4279 at 199.471 kb on + strand, within GFF4279 at 199.471 kb on + strand, within GFF4279 at 199.472 kb on - strand, within GFF4279 at 199.472 kb on - strand, within GFF4279 at 199.522 kb on + strand, within GFF4279 at 199.523 kb on - strand, within GFF4279 at 199.534 kb on + strand, within GFF4279 at 199.780 kb on + strand at 199.991 kb on + strand, within GFF4280 at 199.991 kb on + strand, within GFF4280 at 199.991 kb on + strand, within GFF4280 at 199.992 kb on - strand, within GFF4280 at 200.389 kb on - strand, within GFF4280 at 200.417 kb on + strand, within GFF4280 at 200.649 kb on - strand, within GFF4280 at 201.114 kb on - strand, within GFF4281 at 201.114 kb on - strand, within GFF4281 at 201.125 kb on + strand, within GFF4281 at 201.380 kb on + strand, within GFF4281 at 201.624 kb on + strand, within GFF4281 at 201.625 kb on - strand, within GFF4281
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 198,955 + GFF4279 0.38 -2.9 198,955 + GFF4279 0.38 -0.3 198,956 - GFF4279 0.38 -2.2 198,982 + GFF4279 0.40 +1.6 198,983 - GFF4279 0.40 -0.4 199,162 + GFF4279 0.53 -0.3 199,162 + GFF4279 0.53 +1.1 199,163 - GFF4279 0.53 -1.8 199,163 - GFF4279 0.53 -1.1 199,163 - GFF4279 0.53 -2.5 199,309 + GFF4279 0.63 +1.1 199,310 - GFF4279 0.64 +0.6 199,363 + GFF4279 0.67 -0.5 199,363 + GFF4279 0.67 +0.2 199,363 + GFF4279 0.67 -1.6 199,363 + GFF4279 0.67 +1.4 199,364 - GFF4279 0.67 +0.4 199,471 + GFF4279 0.75 -0.8 199,471 + GFF4279 0.75 +1.1 199,472 - GFF4279 0.75 -0.5 199,472 - GFF4279 0.75 -0.5 199,522 + GFF4279 0.79 -2.2 199,523 - GFF4279 0.79 -1.2 199,534 + GFF4279 0.80 +0.4 199,780 + -0.4 199,991 + GFF4280 0.15 +0.4 199,991 + GFF4280 0.15 -0.7 199,991 + GFF4280 0.15 -2.9 199,992 - GFF4280 0.15 -3.2 200,389 - GFF4280 0.55 -0.6 200,417 + GFF4280 0.58 -0.3 200,649 - GFF4280 0.81 +0.1 201,114 - GFF4281 0.18 -0.4 201,114 - GFF4281 0.18 -0.6 201,125 + GFF4281 0.20 -1.7 201,380 + GFF4281 0.53 +0.4 201,624 + GFF4281 0.85 -0.6 201,625 - GFF4281 0.85 +1.1
Or see this region's nucleotide sequence