Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4159 and GFF4160 overlap by 4 nucleotides GFF4160 and GFF4161 overlap by 17 nucleotides GFF4161 and GFF4162 are separated by 11 nucleotides
GFF4159 - no description, at 64,248 to 64,967
GFF4159
GFF4160 - Demethylmenaquinone methyltransferase-like protein, at 64,964 to 65,719
GFF4160
GFF4161 - hypothetical protein, at 65,703 to 66,131
GFF4161
GFF4162 - Aldehyde dehydrogenase B (EC 1.2.1.22), at 66,143 to 67,672
GFF4162
Position (kb) 65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 65.069 kb on + strand, within GFF4160 at 65.070 kb on - strand, within GFF4160 at 65.126 kb on + strand, within GFF4160 at 65.126 kb on + strand, within GFF4160 at 65.177 kb on + strand, within GFF4160 at 65.178 kb on - strand, within GFF4160 at 65.474 kb on + strand, within GFF4160 at 65.474 kb on + strand, within GFF4160 at 65.475 kb on - strand, within GFF4160 at 65.475 kb on - strand, within GFF4160 at 65.574 kb on - strand, within GFF4160 at 65.574 kb on - strand, within GFF4160 at 65.657 kb on + strand at 65.814 kb on + strand, within GFF4161 at 65.922 kb on + strand, within GFF4161 at 65.923 kb on - strand, within GFF4161 at 65.941 kb on - strand, within GFF4161 at 65.941 kb on - strand, within GFF4161 at 65.947 kb on - strand, within GFF4161 at 65.985 kb on + strand, within GFF4161 at 66.054 kb on + strand, within GFF4161 at 66.054 kb on + strand, within GFF4161 at 66.055 kb on - strand, within GFF4161 at 66.073 kb on - strand, within GFF4161 at 66.073 kb on - strand, within GFF4161 at 66.314 kb on + strand, within GFF4162 at 66.315 kb on - strand, within GFF4162 at 66.315 kb on - strand, within GFF4162 at 66.546 kb on - strand, within GFF4162 at 66.546 kb on - strand, within GFF4162 at 66.587 kb on + strand, within GFF4162 at 66.588 kb on - strand, within GFF4162 at 66.588 kb on - strand, within GFF4162 at 66.632 kb on + strand, within GFF4162 at 66.632 kb on + strand, within GFF4162 at 66.933 kb on - strand, within GFF4162
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 65,069 + GFF4160 0.14 +2.2 65,070 - GFF4160 0.14 +0.6 65,126 + GFF4160 0.21 -0.1 65,126 + GFF4160 0.21 -2.5 65,177 + GFF4160 0.28 -2.2 65,178 - GFF4160 0.28 -2.2 65,474 + GFF4160 0.67 -1.1 65,474 + GFF4160 0.67 -0.3 65,475 - GFF4160 0.68 +1.0 65,475 - GFF4160 0.68 -0.3 65,574 - GFF4160 0.81 -2.1 65,574 - GFF4160 0.81 -0.3 65,657 + -0.3 65,814 + GFF4161 0.26 -0.8 65,922 + GFF4161 0.51 +0.1 65,923 - GFF4161 0.51 -0.5 65,941 - GFF4161 0.55 +0.2 65,941 - GFF4161 0.55 +0.2 65,947 - GFF4161 0.57 -2.5 65,985 + GFF4161 0.66 -1.2 66,054 + GFF4161 0.82 +0.2 66,054 + GFF4161 0.82 -2.8 66,055 - GFF4161 0.82 -0.7 66,073 - GFF4161 0.86 -2.3 66,073 - GFF4161 0.86 -0.2 66,314 + GFF4162 0.11 -0.7 66,315 - GFF4162 0.11 -1.0 66,315 - GFF4162 0.11 -0.4 66,546 - GFF4162 0.26 +0.5 66,546 - GFF4162 0.26 -3.1 66,587 + GFF4162 0.29 -3.1 66,588 - GFF4162 0.29 +0.2 66,588 - GFF4162 0.29 -0.5 66,632 + GFF4162 0.32 -0.3 66,632 + GFF4162 0.32 -1.1 66,933 - GFF4162 0.52 +0.0
Or see this region's nucleotide sequence