Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4138 and GFF4139 are separated by 6 nucleotides GFF4139 and GFF4140 are separated by 192 nucleotides GFF4140 and GFF4141 overlap by 4 nucleotides GFF4141 and GFF4142 are separated by 27 nucleotides
GFF4138 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 47,117 to 48,709
GFF4138
GFF4139 - probable epoxide hydrolase, at 48,716 to 49,645
GFF4139
GFF4140 - no description, at 49,838 to 50,137
GFF4140
GFF4141 - no description, at 50,134 to 50,250
GFF4141
GFF4142 - no description, at 50,278 to 50,634
GFF4142
Position (kb) 48
49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 47.973 kb on - strand, within GFF4138 at 47.973 kb on - strand, within GFF4138 at 48.144 kb on - strand, within GFF4138 at 48.236 kb on + strand, within GFF4138 at 48.320 kb on + strand, within GFF4138 at 48.336 kb on - strand, within GFF4138 at 48.336 kb on - strand, within GFF4138 at 48.350 kb on + strand, within GFF4138 at 48.651 kb on - strand at 48.651 kb on - strand at 48.814 kb on - strand, within GFF4139 at 48.909 kb on - strand, within GFF4139 at 49.116 kb on + strand, within GFF4139 at 49.470 kb on + strand, within GFF4139 at 49.471 kb on - strand, within GFF4139 at 50.111 kb on + strand at 50.249 kb on - strand at 50.294 kb on - strand at 50.329 kb on + strand, within GFF4142 at 50.336 kb on - strand, within GFF4142 at 50.519 kb on - strand, within GFF4142 at 50.603 kb on - strand at 50.603 kb on - strand at 50.633 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 47,973 - GFF4138 0.54 +0.3 47,973 - GFF4138 0.54 -3.3 48,144 - GFF4138 0.64 +0.5 48,236 + GFF4138 0.70 +1.5 48,320 + GFF4138 0.76 -1.5 48,336 - GFF4138 0.77 +0.2 48,336 - GFF4138 0.77 +1.6 48,350 + GFF4138 0.77 +1.4 48,651 - +0.3 48,651 - +2.1 48,814 - GFF4139 0.11 +0.8 48,909 - GFF4139 0.21 -1.2 49,116 + GFF4139 0.43 -0.3 49,470 + GFF4139 0.81 +0.7 49,471 - GFF4139 0.81 +0.4 50,111 + +0.1 50,249 - +0.3 50,294 - -0.4 50,329 + GFF4142 0.14 -0.5 50,336 - GFF4142 0.16 -1.0 50,519 - GFF4142 0.68 -0.5 50,603 - +0.3 50,603 - -0.5 50,633 - -0.4
Or see this region's nucleotide sequence