Strain Fitness in Variovorax sp. SCN45 around GFF3802

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3800 and GFF3801 are separated by 18 nucleotidesGFF3801 and GFF3802 are separated by 89 nucleotidesGFF3802 and GFF3803 overlap by 4 nucleotidesGFF3803 and GFF3804 are separated by 31 nucleotides GFF3800 - Fumarylacetoacetate hydrolase family protein, at 300,291 to 301,388 GFF3800 GFF3801 - Response regulator receiver protein, at 301,407 to 302,186 GFF3801 GFF3802 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 302,276 to 304,045 GFF3802 GFF3803 - hypothetical protein, at 304,042 to 304,254 GFF3803 GFF3804 - BUG/TctC family periplasmic protein, at 304,286 to 305,260 GFF3804 Position (kb) 302 303 304 305Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 301.449 kb on + strandat 301.450 kb on - strandat 301.450 kb on - strandat 301.475 kb on - strandat 301.738 kb on + strand, within GFF3801at 301.739 kb on - strand, within GFF3801at 301.739 kb on - strand, within GFF3801at 301.816 kb on + strand, within GFF3801at 301.816 kb on + strand, within GFF3801at 301.816 kb on + strand, within GFF3801at 301.832 kb on - strand, within GFF3801at 301.954 kb on + strand, within GFF3801at 301.954 kb on + strand, within GFF3801at 301.954 kb on + strand, within GFF3801at 301.954 kb on + strand, within GFF3801at 301.954 kb on + strand, within GFF3801at 301.955 kb on - strand, within GFF3801at 301.988 kb on - strand, within GFF3801at 302.086 kb on + strand, within GFF3801at 302.086 kb on + strand, within GFF3801at 302.086 kb on + strand, within GFF3801at 302.086 kb on + strand, within GFF3801at 302.087 kb on - strand, within GFF3801at 302.087 kb on - strand, within GFF3801at 302.087 kb on - strand, within GFF3801at 302.087 kb on - strand, within GFF3801at 302.215 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.220 kb on - strandat 302.220 kb on - strandat 302.220 kb on - strandat 302.220 kb on - strandat 302.220 kb on - strandat 302.220 kb on - strandat 302.220 kb on - strandat 302.227 kb on - strandat 302.227 kb on - strandat 302.227 kb on - strandat 302.234 kb on + strandat 302.234 kb on + strandat 302.234 kb on + strandat 302.235 kb on - strandat 302.235 kb on - strandat 302.378 kb on + strandat 302.378 kb on + strandat 302.378 kb on + strandat 302.379 kb on - strandat 302.379 kb on - strandat 302.379 kb on - strandat 302.379 kb on - strandat 302.379 kb on - strandat 302.379 kb on - strandat 302.387 kb on + strandat 302.387 kb on + strandat 302.387 kb on + strandat 302.387 kb on + strandat 302.388 kb on - strandat 302.388 kb on - strandat 302.388 kb on - strandat 302.388 kb on - strandat 302.660 kb on + strand, within GFF3802at 302.660 kb on + strand, within GFF3802at 302.660 kb on + strand, within GFF3802at 302.660 kb on + strand, within GFF3802at 302.661 kb on - strand, within GFF3802at 302.661 kb on - strand, within GFF3802at 302.661 kb on - strand, within GFF3802at 302.661 kb on - strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.756 kb on + strand, within GFF3802at 302.756 kb on + strand, within GFF3802at 302.756 kb on + strand, within GFF3802at 302.756 kb on + strand, within GFF3802at 302.756 kb on + strand, within GFF3802at 302.757 kb on - strand, within GFF3802at 302.757 kb on - strand, within GFF3802at 302.757 kb on - strand, within GFF3802at 302.757 kb on - strand, within GFF3802at 302.892 kb on - strand, within GFF3802at 302.892 kb on - strand, within GFF3802at 302.892 kb on - strand, within GFF3802at 302.981 kb on + strand, within GFF3802at 302.981 kb on + strand, within GFF3802at 302.982 kb on - strand, within GFF3802at 302.993 kb on + strand, within GFF3802at 302.993 kb on + strand, within GFF3802at 302.994 kb on - strand, within GFF3802at 302.994 kb on - strand, within GFF3802at 303.122 kb on + strand, within GFF3802at 303.123 kb on - strand, within GFF3802at 303.123 kb on - strand, within GFF3802at 303.123 kb on - strand, within GFF3802at 303.281 kb on + strand, within GFF3802at 303.281 kb on + strand, within GFF3802at 303.281 kb on + strand, within GFF3802at 303.281 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.440 kb on + strand, within GFF3802at 303.441 kb on - strand, within GFF3802at 303.441 kb on - strand, within GFF3802at 303.441 kb on - strand, within GFF3802at 303.441 kb on - strand, within GFF3802at 303.620 kb on + strand, within GFF3802at 303.621 kb on - strand, within GFF3802at 303.621 kb on - strand, within GFF3802at 303.920 kb on + strandat 303.920 kb on + strandat 303.920 kb on + strandat 303.920 kb on + strandat 303.921 kb on - strandat 303.921 kb on - strandat 303.921 kb on - strandat 304.085 kb on - strand, within GFF3803at 304.233 kb on - strandat 304.365 kb on - strandat 304.547 kb on + strand, within GFF3804at 304.547 kb on + strand, within GFF3804at 304.548 kb on - strand, within GFF3804at 304.548 kb on - strand, within GFF3804at 304.548 kb on - strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.637 kb on + strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.638 kb on - strand, within GFF3804at 304.721 kb on + strand, within GFF3804at 304.721 kb on + strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.722 kb on - strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.751 kb on + strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.752 kb on - strand, within GFF3804at 304.839 kb on - strand, within GFF3804

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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301,449 + -2.7
301,450 - -2.4
301,450 - -1.4
301,475 - -1.3
301,738 + GFF3801 0.42 +0.0
301,739 - GFF3801 0.43 -3.1
301,739 - GFF3801 0.43 -0.7
301,816 + GFF3801 0.52 -0.4
301,816 + GFF3801 0.52 -3.0
301,816 + GFF3801 0.52 +0.0
301,832 - GFF3801 0.54 -1.2
301,954 + GFF3801 0.70 -2.3
301,954 + GFF3801 0.70 -0.6
301,954 + GFF3801 0.70 +1.1
301,954 + GFF3801 0.70 -0.2
301,954 + GFF3801 0.70 +0.0
301,955 - GFF3801 0.70 +0.3
301,988 - GFF3801 0.74 +0.2
302,086 + GFF3801 0.87 -0.8
302,086 + GFF3801 0.87 +0.7
302,086 + GFF3801 0.87 -1.2
302,086 + GFF3801 0.87 +0.1
302,087 - GFF3801 0.87 -0.2
302,087 - GFF3801 0.87 -1.5
302,087 - GFF3801 0.87 -0.3
302,087 - GFF3801 0.87 +0.2
302,215 + -0.4
302,219 + -0.4
302,219 + +0.9
302,219 + -1.2
302,219 + -0.7
302,219 + -1.7
302,219 + +0.1
302,219 + -1.3
302,219 + -2.0
302,220 - +1.3
302,220 - -0.2
302,220 - -3.0
302,220 - -0.7
302,220 - -2.1
302,220 - +0.3
302,220 - -0.0
302,227 - -0.1
302,227 - -0.0
302,227 - -0.8
302,234 + +0.5
302,234 + +0.0
302,234 + -0.5
302,235 - +0.8
302,235 - -2.3
302,378 + +0.0
302,378 + +2.9
302,378 + +0.2
302,379 - -0.9
302,379 - -1.2
302,379 - -0.3
302,379 - -0.9
302,379 - -2.7
302,379 - +1.9
302,387 + +0.6
302,387 + +0.0
302,387 + +0.4
302,387 + -1.1
302,388 - +0.7
302,388 - -1.8
302,388 - -0.2
302,388 - +0.9
302,660 + GFF3802 0.22 -0.8
302,660 + GFF3802 0.22 +0.8
302,660 + GFF3802 0.22 -1.6
302,660 + GFF3802 0.22 -1.6
302,661 - GFF3802 0.22 -1.3
302,661 - GFF3802 0.22 +0.2
302,661 - GFF3802 0.22 -1.1
302,661 - GFF3802 0.22 -1.7
302,741 + GFF3802 0.26 +0.6
302,741 + GFF3802 0.26 -1.5
302,741 + GFF3802 0.26 -1.4
302,741 + GFF3802 0.26 -1.7
302,741 + GFF3802 0.26 -3.1
302,741 + GFF3802 0.26 -2.5
302,741 + GFF3802 0.26 +1.9
302,741 + GFF3802 0.26 +2.6
302,741 + GFF3802 0.26 -0.4
302,742 - GFF3802 0.26 +0.1
302,742 - GFF3802 0.26 +1.5
302,742 - GFF3802 0.26 -1.2
302,742 - GFF3802 0.26 +0.0
302,742 - GFF3802 0.26 -1.4
302,742 - GFF3802 0.26 +0.4
302,742 - GFF3802 0.26 -2.6
302,742 - GFF3802 0.26 +0.0
302,742 - GFF3802 0.26 -2.7
302,742 - GFF3802 0.26 -0.0
302,742 - GFF3802 0.26 +1.0
302,742 - GFF3802 0.26 -1.5
302,742 - GFF3802 0.26 +1.8
302,742 - GFF3802 0.26 +4.5
302,742 - GFF3802 0.26 -1.6
302,742 - GFF3802 0.26 -2.6
302,742 - GFF3802 0.26 +2.0
302,742 - GFF3802 0.26 +1.4
302,742 - GFF3802 0.26 +0.4
302,744 + GFF3802 0.26 -0.2
302,744 + GFF3802 0.26 +1.4
302,744 + GFF3802 0.26 +1.2
302,744 + GFF3802 0.26 -1.9
302,744 + GFF3802 0.26 +2.2
302,744 + GFF3802 0.26 +0.7
302,744 + GFF3802 0.26 -1.1
302,745 - GFF3802 0.26 -0.3
302,745 - GFF3802 0.26 +1.2
302,745 - GFF3802 0.26 -1.2
302,745 - GFF3802 0.26 -2.0
302,745 - GFF3802 0.26 -2.5
302,745 - GFF3802 0.26 -0.0
302,745 - GFF3802 0.26 -1.5
302,756 + GFF3802 0.27 +0.7
302,756 + GFF3802 0.27 -0.6
302,756 + GFF3802 0.27 +0.0
302,756 + GFF3802 0.27 -0.6
302,756 + GFF3802 0.27 -2.0
302,757 - GFF3802 0.27 -0.2
302,757 - GFF3802 0.27 -0.6
302,757 - GFF3802 0.27 -1.3
302,757 - GFF3802 0.27 -1.3
302,892 - GFF3802 0.35 -1.4
302,892 - GFF3802 0.35 -0.4
302,892 - GFF3802 0.35 -1.0
302,981 + GFF3802 0.40 +0.3
302,981 + GFF3802 0.40 -0.3
302,982 - GFF3802 0.40 +1.0
302,993 + GFF3802 0.41 -2.4
302,993 + GFF3802 0.41 +1.4
302,994 - GFF3802 0.41 +0.8
302,994 - GFF3802 0.41 -1.0
303,122 + GFF3802 0.48 -0.9
303,123 - GFF3802 0.48 -1.1
303,123 - GFF3802 0.48 -1.2
303,123 - GFF3802 0.48 +1.1
303,281 + GFF3802 0.57 +0.2
303,281 + GFF3802 0.57 -0.8
303,281 + GFF3802 0.57 -1.7
303,281 + GFF3802 0.57 +1.5
303,440 + GFF3802 0.66 +1.3
303,440 + GFF3802 0.66 +1.0
303,440 + GFF3802 0.66 +1.2
303,440 + GFF3802 0.66 -1.6
303,440 + GFF3802 0.66 +2.8
303,440 + GFF3802 0.66 -0.1
303,440 + GFF3802 0.66 -1.2
303,440 + GFF3802 0.66 -1.6
303,441 - GFF3802 0.66 +1.4
303,441 - GFF3802 0.66 +0.0
303,441 - GFF3802 0.66 -2.6
303,441 - GFF3802 0.66 +0.0
303,620 + GFF3802 0.76 -0.3
303,621 - GFF3802 0.76 -1.2
303,621 - GFF3802 0.76 +0.0
303,920 + -1.0
303,920 + +0.6
303,920 + -0.6
303,920 + +2.4
303,921 - +1.4
303,921 - +0.7
303,921 - -1.2
304,085 - GFF3803 0.20 -2.6
304,233 - -3.1
304,365 - +0.5
304,547 + GFF3804 0.27 +3.8
304,547 + GFF3804 0.27 -0.2
304,548 - GFF3804 0.27 -3.8
304,548 - GFF3804 0.27 +0.7
304,548 - GFF3804 0.27 +1.1
304,637 + GFF3804 0.36 +1.4
304,637 + GFF3804 0.36 -0.6
304,637 + GFF3804 0.36 -0.8
304,637 + GFF3804 0.36 -0.8
304,637 + GFF3804 0.36 -1.3
304,637 + GFF3804 0.36 -2.1
304,637 + GFF3804 0.36 -2.1
304,637 + GFF3804 0.36 +0.9
304,637 + GFF3804 0.36 -1.5
304,637 + GFF3804 0.36 +1.0
304,637 + GFF3804 0.36 -0.3
304,638 - GFF3804 0.36 +0.3
304,638 - GFF3804 0.36 +0.7
304,638 - GFF3804 0.36 +0.6
304,638 - GFF3804 0.36 +0.2
304,638 - GFF3804 0.36 +0.5
304,638 - GFF3804 0.36 +2.1
304,638 - GFF3804 0.36 -0.8
304,638 - GFF3804 0.36 -1.6
304,638 - GFF3804 0.36 -0.1
304,638 - GFF3804 0.36 -0.5
304,638 - GFF3804 0.36 +2.1
304,638 - GFF3804 0.36 +1.8
304,638 - GFF3804 0.36 -1.0
304,638 - GFF3804 0.36 +2.5
304,721 + GFF3804 0.45 -0.8
304,721 + GFF3804 0.45 -1.3
304,722 - GFF3804 0.45 -2.2
304,722 - GFF3804 0.45 +0.2
304,722 - GFF3804 0.45 -0.3
304,722 - GFF3804 0.45 -0.3
304,722 - GFF3804 0.45 -0.6
304,722 - GFF3804 0.45 +0.9
304,722 - GFF3804 0.45 -1.1
304,722 - GFF3804 0.45 -1.2
304,722 - GFF3804 0.45 -3.2
304,722 - GFF3804 0.45 -1.1
304,722 - GFF3804 0.45 -2.0
304,722 - GFF3804 0.45 +0.8
304,722 - GFF3804 0.45 -1.4
304,722 - GFF3804 0.45 -1.1
304,722 - GFF3804 0.45 -0.8
304,751 + GFF3804 0.48 -1.0
304,751 + GFF3804 0.48 -2.3
304,751 + GFF3804 0.48 +0.5
304,751 + GFF3804 0.48 -1.8
304,751 + GFF3804 0.48 +1.4
304,751 + GFF3804 0.48 -1.7
304,751 + GFF3804 0.48 -2.4
304,751 + GFF3804 0.48 +1.0
304,751 + GFF3804 0.48 -1.5
304,751 + GFF3804 0.48 -3.4
304,751 + GFF3804 0.48 -2.5
304,751 + GFF3804 0.48 +0.8
304,751 + GFF3804 0.48 -1.2
304,752 - GFF3804 0.48 +0.1
304,752 - GFF3804 0.48 +1.3
304,752 - GFF3804 0.48 -2.1
304,752 - GFF3804 0.48 -1.0
304,752 - GFF3804 0.48 -1.4
304,752 - GFF3804 0.48 -0.5
304,752 - GFF3804 0.48 +2.4
304,752 - GFF3804 0.48 +1.2
304,752 - GFF3804 0.48 +0.2
304,752 - GFF3804 0.48 +0.9
304,752 - GFF3804 0.48 -4.1
304,752 - GFF3804 0.48 +0.2
304,839 - GFF3804 0.57 +0.3

Or see this region's nucleotide sequence