Strain Fitness in Variovorax sp. SCN45 around GFF3727

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3726 and GFF3727 are separated by 206 nucleotidesGFF3727 and GFF3728 are separated by 168 nucleotidesGFF3728 and GFF3729 are separated by 27 nucleotides GFF3726 - RND efflux system, membrane fusion protein, at 225,048 to 226,313 GFF3726 GFF3727 - Transcriptional regulator, AcrR family, at 226,520 to 227,161 GFF3727 GFF3728 - no description, at 227,330 to 227,557 GFF3728 GFF3729 - Transcriptional regulator, AraC family, at 227,585 to 228,352 GFF3729 Position (kb) 226 227 228Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 225.577 kb on + strand, within GFF3726at 225.577 kb on + strand, within GFF3726at 225.577 kb on + strand, within GFF3726at 225.578 kb on - strand, within GFF3726at 225.578 kb on - strand, within GFF3726at 225.643 kb on + strand, within GFF3726at 225.643 kb on + strand, within GFF3726at 225.643 kb on + strand, within GFF3726at 225.643 kb on + strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.763 kb on + strand, within GFF3726at 225.763 kb on + strand, within GFF3726at 225.853 kb on + strand, within GFF3726at 225.895 kb on + strand, within GFF3726at 225.896 kb on - strand, within GFF3726at 225.896 kb on - strand, within GFF3726at 225.896 kb on - strand, within GFF3726at 225.896 kb on - strand, within GFF3726at 226.372 kb on + strandat 226.403 kb on + strandat 226.408 kb on + strandat 226.409 kb on - strandat 226.409 kb on - strandat 226.412 kb on + strandat 226.413 kb on - strandat 226.427 kb on - strandat 226.427 kb on - strandat 226.427 kb on - strandat 226.427 kb on - strandat 226.476 kb on - strandat 226.476 kb on - strandat 226.476 kb on - strandat 226.504 kb on + strandat 226.504 kb on + strandat 226.504 kb on + strandat 226.505 kb on - strandat 226.505 kb on - strandat 226.505 kb on - strandat 226.505 kb on - strandat 226.505 kb on - strandat 226.505 kb on - strandat 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.637 kb on + strand, within GFF3727at 226.638 kb on - strand, within GFF3727at 226.638 kb on - strand, within GFF3727at 226.638 kb on - strand, within GFF3727at 226.638 kb on - strand, within GFF3727at 226.758 kb on + strand, within GFF3727at 226.759 kb on - strand, within GFF3727at 226.759 kb on - strand, within GFF3727at 226.759 kb on - strand, within GFF3727at 226.759 kb on - strand, within GFF3727at 226.847 kb on + strand, within GFF3727at 226.847 kb on + strand, within GFF3727at 226.847 kb on + strand, within GFF3727at 226.848 kb on - strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.084 kb on + strand, within GFF3727at 227.085 kb on - strand, within GFF3727at 227.085 kb on - strand, within GFF3727at 227.162 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.280 kb on + strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.281 kb on - strandat 227.661 kb on + strandat 227.661 kb on + strandat 227.661 kb on + strandat 227.991 kb on + strand, within GFF3729at 227.992 kb on - strand, within GFF3729at 227.992 kb on - strand, within GFF3729at 227.992 kb on - strand, within GFF3729at 228.099 kb on + strand, within GFF3729at 228.099 kb on + strand, within GFF3729

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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225,577 + GFF3726 0.42 -1.3
225,577 + GFF3726 0.42 +0.6
225,577 + GFF3726 0.42 -1.3
225,578 - GFF3726 0.42 +0.9
225,578 - GFF3726 0.42 -0.2
225,643 + GFF3726 0.47 +1.0
225,643 + GFF3726 0.47 +0.7
225,643 + GFF3726 0.47 -1.4
225,643 + GFF3726 0.47 -0.5
225,644 - GFF3726 0.47 +2.4
225,644 - GFF3726 0.47 +2.7
225,644 - GFF3726 0.47 +1.8
225,644 - GFF3726 0.47 -3.0
225,644 - GFF3726 0.47 +0.2
225,644 - GFF3726 0.47 -1.6
225,644 - GFF3726 0.47 +2.4
225,644 - GFF3726 0.47 +0.5
225,763 + GFF3726 0.56 -3.0
225,763 + GFF3726 0.56 +1.4
225,853 + GFF3726 0.64 -0.3
225,895 + GFF3726 0.67 -1.3
225,896 - GFF3726 0.67 -3.2
225,896 - GFF3726 0.67 -1.5
225,896 - GFF3726 0.67 -1.5
225,896 - GFF3726 0.67 -1.6
226,372 + +0.4
226,403 + +0.8
226,408 + -0.4
226,409 - -1.8
226,409 - -2.0
226,412 + +2.0
226,413 - -1.1
226,427 - +1.8
226,427 - +0.0
226,427 - +0.4
226,427 - +3.0
226,476 - -0.8
226,476 - -2.0
226,476 - -3.4
226,504 + -1.4
226,504 + +1.4
226,504 + -2.5
226,505 - +0.8
226,505 - -4.4
226,505 - +0.0
226,505 - -0.8
226,505 - +1.4
226,505 - -1.9
226,637 + GFF3727 0.18 -1.1
226,637 + GFF3727 0.18 +0.4
226,637 + GFF3727 0.18 +0.8
226,637 + GFF3727 0.18 -2.2
226,637 + GFF3727 0.18 +1.6
226,637 + GFF3727 0.18 -0.3
226,638 - GFF3727 0.18 +2.0
226,638 - GFF3727 0.18 -1.7
226,638 - GFF3727 0.18 +0.0
226,638 - GFF3727 0.18 +0.2
226,758 + GFF3727 0.37 -0.4
226,759 - GFF3727 0.37 -1.8
226,759 - GFF3727 0.37 +0.2
226,759 - GFF3727 0.37 +1.8
226,759 - GFF3727 0.37 -1.3
226,847 + GFF3727 0.51 +0.8
226,847 + GFF3727 0.51 -0.6
226,847 + GFF3727 0.51 -0.7
226,848 - GFF3727 0.51 +0.0
227,084 + GFF3727 0.88 +0.7
227,084 + GFF3727 0.88 -0.7
227,084 + GFF3727 0.88 -2.5
227,084 + GFF3727 0.88 +0.8
227,084 + GFF3727 0.88 +0.7
227,084 + GFF3727 0.88 -1.4
227,085 - GFF3727 0.88 -0.2
227,085 - GFF3727 0.88 +0.8
227,162 + -1.0
227,280 + -0.2
227,280 + +0.1
227,280 + +0.9
227,280 + -0.4
227,280 + -2.7
227,280 + +1.7
227,280 + -2.4
227,280 + -0.4
227,280 + -2.8
227,280 + -1.9
227,280 + -2.5
227,280 + -0.7
227,281 - +0.1
227,281 - +0.4
227,281 - +2.0
227,281 - -0.5
227,281 - -1.1
227,281 - +1.0
227,281 - -1.5
227,281 - +0.5
227,281 - +1.4
227,281 - -1.4
227,281 - +0.0
227,281 - -1.1
227,281 - +0.7
227,281 - -1.8
227,281 - -0.6
227,281 - +0.3
227,661 + +1.0
227,661 + +0.8
227,661 + +1.5
227,991 + GFF3729 0.53 -0.4
227,992 - GFF3729 0.53 +1.7
227,992 - GFF3729 0.53 +0.1
227,992 - GFF3729 0.53 +2.4
228,099 + GFF3729 0.67 -1.5
228,099 + GFF3729 0.67 -2.2

Or see this region's nucleotide sequence